SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55270 | AT | Annotation by Michelle Graham. TAIR10: mitogen-activated protein kinase phosphatase 1 | chr3:20496775-20499408 FORWARD LENGTH=784 | SoyBase | E_val: 0 | ISS |
| GO:0006470 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0010225 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-C | SoyBase | N/A | ISS |
| GO:0010374 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex development | SoyBase | N/A | ISS |
| GO:0016311 | GO-bp | Annotation by Michelle Graham. GO Biological Process: dephosphorylation | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004725 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity | SoyBase | N/A | ISS |
| GO:0008138 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine/serine/threonine phosphatase activity | SoyBase | N/A | ISS |
| GO:0016791 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatase activity | SoyBase | N/A | ISS |
| GO:0017017 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: MAP kinase tyrosine/serine/threonine phosphatase activity | SoyBase | N/A | ISS |
| KOG1718 | KOG | Dual specificity phosphatase | JGI | ISS | |
| PTHR10159 | Panther | DUAL SPECIFICITY PROTEIN PHOSPHATASE | JGI | ISS | |
| PTHR10159:SF122 | Panther | MAP KINASE TYROSINE/SERINE/THREONINE PHOSPHATASE-R | JGI | ISS | |
| PF00782 | PFAM | Dual specificity phosphatase, catalytic domain | JGI | ISS | |
| UniRef100_D7LV28 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Map kinase phosphatase n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LV28_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N525 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N525_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g52300 not represented in the dataset |
Glyma18g52300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g10561 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g286300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g52300.1 sequence type=CDS gene model=Glyma18g52300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGGGAACGATGACGCGGGCCACCTCTCCGCCTCCCGGAAGATGTTCTGGCGGTCGGCGTCGTGGTCCTCCTCGCGAACCGCCGCCGGAAACGCCTCTTCCGGCGAGACGGAGAAGGGTTTCGCCGATTCCGGTGCCGCTGACGGTACTCACGGCCAGAACCGGCGGTTTGGTCCGCCGCCGCTGACGCCTCGGTCGCAGCAGAATTGCAAGGCGCGGTCGTGCCTGCCACCGCTGCAGCCGCTCTCCATCGCCCGGCGGAGCCTCGACGAGTGGCCGAAGGCGGGCTCCGACGACATCGGTGAGTGGCCGCAGCCGCCTACCACCCCCGGCGGGAGAGGTAATGGTAGCAATGGTGAAAGGTTGAAACTTGATTTGTCTTCCATTCAGCATAACAACCCTGATCATAGTAGGAGTAACAATGGGAATGGGCTTGTGAAGAGGGATAAGATTGCATTTTTTGATAAAGAGTGTTCAAAAGTTGCTGATCATGTGTACCTTGGTGGTGATGCTGTTGCCAGGGATAGGGACATCTTGAAGCATAATGGGATAACTCATGTCTTGAATTGTGTGGGGTTTGTGTGTCCTGAGTACTTTAAGGCTGATTTTGTTTATAGGACTTTGTGGCTGCAGGATAGTCCATCTGAGGATATTACTAGTATTTTGTATGATGTGTTTGACTATTTTGAGGATGTCAGGGAGCAAGGTGGGAGGGTGTTTGTGCACTGTTGTCAAGGGGTGTCTAGGTCTACCTCCTTGGTCATTGCTTACCTTATGTGGAGGGAAGGGCAGAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCGGCGAGAGGGATTGCTGATCCAAATATGGGGTTTGCTTGCCAGCTGTTGCAGTGCCAGAAGAGGGTTCATGCTGTCCCTCTTAGCCCTAGCTCTTTGCTGAGGATGTATAGAATTGCTCCCCATTCGCCGTATGATCCTTTGCATCTTGTTCCAAAAATGTTGGTGGATCCTTCATTAGCTGCATTGGACTCCAGAGGTGCGTTTATCGTGCACATTCCTTCAGCAATATATGTTTGGGTGGGTAAGAACTGTGAGGCCACCATGGAGAGGGACGCCAGAGGGGCTGTTGGCCAGATTGTCCGGTATGAGAAGGTACAAGGGCCTATTGTGATGATTAAGGAAGGTGAGGAGCCTGTTTACTTTTGGGATGCTTTTTCAGATTTTCTGCCCTTAATGGACAAATCTGGCAAATCTGGCAGTAGGATAGAAGATGGAAAACTATTTGTTTTGCCTGGTAAGAGGAGAGTAGATGCATACAATGTTGATTACGAAGTTTTCACAAAAGCAATCACGGGAGGCTTCGTGCCTCCATTTGGTTCATCTGGTGAACATGAAACCCATTTGCCTGCAAGGGAGAGTAGTTGGAGTGTAAGGCGTAAAGTTTCCCATGGTAACATGAAAGAGGTTGTTTCGGTCCCTCATGGTAACATGAAAGAGGTTGTTTCGGTCCCTCGGCTATCGTTTCCAAGGGTTTATTCGGATTCCATGTTGTGTCTTCGTACATCAGCAAATGCAATTTTGTCTCCATCCTCATCCCTGTCGTCATCTTCATCATCTATATCATCATCATCCTCACCGTCTTTTGTTTCTCCAGATTCCATTACTTCTGATTCTAGCATTCATTCAAAGTTTTTGTTAGAAGTGTCCCCAGACTCTTCATCTCTGTCTAATTTTTCTAGTTTGTCAATCACATCAAATTCTACTTCTCATAATTTTTCTAGTTTGTCCATCACATCAAATTCTACTTCTCAACCAGTGTCTCACAGTACAGATATCCTTGGTGTCAAGTTATCACATCCCTTGTTTCAGTCAGCCTCTTTACCATTGAAGAAACCATCAACTTCCCTTGCTGAACGCAGAGGTAGCTTGTCAAAAATTCTGATGTTGCCGCTAATGAATGATAAGACACAAGTAACAGATAAATCGACAACGTCTCATGCTAGTCAAGAATCTGACATTCTTGTTAATGACAATGTTAGCTATCAACAACAATCAGATAGTAAAGATTATTTTTGCGGGTCTAACAACCATGCCAAGGATGGAGGTGTGAATTCCATTCAAAAGTGTGAGCCAAGCATTGCTGATAGCATGCACCTCAAGGAATCATCACTTAGTCAGTCTACCACATTGAAGGGAACTAATGACAGTGGCTTACTGCAGTATAATGTCGCACAGACTTCGGTATATCACTGGCCCAGTATAGAAAAGATTGAGACATTTGGTGCAAGTCATTTGGATTCTAAATCTGCTTTTGTCATATTCTCTCCCAGTATGCATGTACATGCAGGGAACATTTTATATATTTGGGTAGGGAGGTCTTTCAGTTGTGACGCTTCACAGGTTCACTTAGATATTGATAAACAATCAGATGTAGGAGCTGTCGACTGGAATCAAATTGGATGTGATCTCCTTGCTCGGTTTAGTTTGCCAAAGAACTCAGTCATCAAGGTTGTTAAAGAGAATGAGGAACCCTCAGAGTTCCTTGCTTTGCTGAGTTCATTGTAG
>Glyma18g52300.1 sequence type=predicted peptide gene model=Glyma18g52300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVGNDDAGHLSASRKMFWRSASWSSSRTAAGNASSGETEKGFADSGAADGTHGQNRRFGPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTTPGGRGNGSNGERLKLDLSSIQHNNPDHSRSNNGNGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKHNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAVPLSPSSLLRMYRIAPHSPYDPLHLVPKMLVDPSLAALDSRGAFIVHIPSAIYVWVGKNCEATMERDARGAVGQIVRYEKVQGPIVMIKEGEEPVYFWDAFSDFLPLMDKSGKSGSRIEDGKLFVLPGKRRVDAYNVDYEVFTKAITGGFVPPFGSSGEHETHLPARESSWSVRRKVSHGNMKEVVSVPHGNMKEVVSVPRLSFPRVYSDSMLCLRTSANAILSPSSSLSSSSSSISSSSSPSFVSPDSITSDSSIHSKFLLEVSPDSSSLSNFSSLSITSNSTSHNFSSLSITSNSTSQPVSHSTDILGVKLSHPLFQSASLPLKKPSTSLAERRGSLSKILMLPLMNDKTQVTDKSTTSHASQESDILVNDNVSYQQQSDSKDYFCGSNNHAKDGGVNSIQKCEPSIADSMHLKESSLSQSTTLKGTNDSGLLQYNVAQTSVYHWPSIEKIETFGASHLDSKSAFVIFSPSMHVHAGNILYIWVGRSFSCDASQVHLDIDKQSDVGAVDWNQIGCDLLARFSLPKNSVIKVVKENEEPSEFLALLSSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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