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Report for Sequence Feature Glyma18g52290

Feature Type:gene_model
Chromosome:Gm18
Start:60935337
stop:60945059
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g52290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55260AT Annotation by Michelle Graham. TAIR10: beta-hexosaminidase 1 | chr3:20489317-20492858 FORWARD LENGTH=541 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0004563GO-mf Annotation by Michelle Graham. GO Molecular Function: beta-N-acetylhexosaminidase activity SoyBaseN/AISS
GO:0015929GO-mf Annotation by Michelle Graham. GO Molecular Function: hexosaminidase activity SoyBaseN/AISS
GO:0043169GO-mf Annotation by Michelle Graham. GO Molecular Function: cation binding SoyBaseN/AISS
KOG2499 KOG Beta-N-acetylhexosaminidase JGI ISS
PTHR22600Panther BETA-HEXOSAMINIDASE JGI ISS
PF00728PFAM Glycosyl hydrolase family 20, catalytic domain JGI ISS
PF02838PFAM Glycosyl hydrolase family 20, domain 2 JGI ISS
UniRef100_A7WM73UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-N-acetylhexosaminidase n=2 Tax=Arabidopsis thaliana RepID=A7WM73_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI000233F126UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F126 related cluster n=1 Tax=unknown RepID=UPI000233F126 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g52290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52290
ParalogEvidenceComments
Glyma02g10570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g286200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g52290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g52290
>Glyma18g52290.1   sequence type=CDS   gene model=Glyma18g52290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGTCTTCAAACCCACCTCTTCTCTTCTCTTTCTCCTCCTCAGTATTTCATACTCTGCTTCTTCAGTTACCTCACTCACCGTACCGCCGCGAGGGGGGGCCCCACTCGACCTCACCACTACTCCGCAACAACAAACCGATGGCGATGATGATTCCCTCACCTACCTCTGGCCCCTCCCCGCAGAGTTCACTTCCGGCGGCGACACTCTCTCCGTTGACCCCGCGCTCACCCTCTCCGTCGCCGGAAACGGCGGTGGCTCCGCCATTCTCAGAGAGGCCTTCGGCCGATACAGAGGGATCGTGTTCAAGAACACCGCTGGTGTCGGGTTTAGTTTCATCAGAAAGCTGAGGGAACGATTGGTGTCTTCTGTTTCGGCATTCGACGTTGACACTTTGAAGATCACAGTCCATTCAGACAACGAGGAGCTTCAATTTGGAGTGGATGAAAGCTATACCTTGCTGGTTCCCAAAGCCAAGGAATCTTCCCAAGTCACGATTGAGGCAAATACAGTTTATGGTGCATTGCGCGGATTAGAGACATTCAGCCAGTTGTGTTCTTTCGATTATACAACTAAAACAGTAAAAATATACAAGGCACCTTGGTCCATCCAAGATAAACCTAGATTTGCATATCGTGGGCTTATGCTGGATACATCAAGGCACTATTTACCTATTGATGTAATTAAGCAGATTATTGAATCTATGTCCTATGCTAAACTTAATGTTCTACATTGGCACATCATAGATGAGCAGTCATTTCCTCTTGAGATACCCACATATCCAAACTTGTGGAAAGGTTCATATACAAAATGGGAACGTTACACAGTAGAAGATGCATATGAAATTGTCAACTTCGCCAAAATGAGAGGCATAAATGTGATGGCAGAAGTGGATGTCCCTGGTCATGCAGAATCATGGGGTGCTGGATATCCTGATCTTTGGCCATCACCTTACTGTAGGGAGCCACTTGATGTTTCAAAGAACTTTACTTTTGATGTCATTTCTGGTATTTTGGCAGATATGAGAAAGCTTTTCCCATTTGAGCTATTTCACTTGGGTGGTGATGAAGTTAATACAGATTGCTGGAGTAGTACTTCTCATGTAAAGGAATGGCTTCAGAGTCACAACATGACCACTAGAGATGCTTATCAATATTTTGTACTGAAGGCCCAAGAGATGGCTGTTTCGAAAAATTGGAGTCCAGTGAACTGGGAGGAAACCTTCAATACGTTTCCATCAAAGCTCCATCCAAAAACCATAGTGCACAACTGGTTGGGCCCTGGTGTTTGTCCAAAGGTTGTCGCAAAAGGTTTCAGGTGCATTTACAGTAACCAGGGTGTCTGGTATCTTGACCATCTGGATGTACCTTGGGATGAGGTATATACAGCTGAGCCACTACAGGGAATACATACAGCTTCCGAACAAGAGCTTGTAATTGGAGGAGAAGTTTGCATGTGGGGTGAGACGGCTGATACATCCAATGTTCAGCAAACAATATGGCCTCGAGCTGCTGCAGCTGCAGAACGCTTATGGAGTCAGAGAGATTCTACCTCACAAAATATTACCTTAATAGCATTGCCCCGGTTGCAAAACTTCAGATGTCTATTGAATAGACGAGGGGTTCCAGCTGCTCCTGTCACAAATTATTATGCTAGAAGGGCACCTGTTGGTCCAGGGTCATGTTATGAACAATAA
Predicted protein sequences of Glyma18g52290
>Glyma18g52290.1   sequence type=predicted peptide   gene model=Glyma18g52290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFVFKPTSSLLFLLLSISYSASSVTSLTVPPRGGAPLDLTTTPQQQTDGDDDSLTYLWPLPAEFTSGGDTLSVDPALTLSVAGNGGGSAILREAFGRYRGIVFKNTAGVGFSFIRKLRERLVSSVSAFDVDTLKITVHSDNEELQFGVDESYTLLVPKAKESSQVTIEANTVYGALRGLETFSQLCSFDYTTKTVKIYKAPWSIQDKPRFAYRGLMLDTSRHYLPIDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEIPTYPNLWKGSYTKWERYTVEDAYEIVNFAKMRGINVMAEVDVPGHAESWGAGYPDLWPSPYCREPLDVSKNFTFDVISGILADMRKLFPFELFHLGGDEVNTDCWSSTSHVKEWLQSHNMTTRDAYQYFVLKAQEMAVSKNWSPVNWEETFNTFPSKLHPKTIVHNWLGPGVCPKVVAKGFRCIYSNQGVWYLDHLDVPWDEVYTAEPLQGIHTASEQELVIGGEVCMWGETADTSNVQQTIWPRAAAAAERLWSQRDSTSQNITLIALPRLQNFRCLLNRRGVPAAPVTNYYARRAPVGPGSCYEQ*






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