Report for Sequence Feature Glyma18g52270
Feature Type: gene_model
Chromosome: Gm18
Start: 60916444
stop: 60924602
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g52270
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G13550 AT
Annotation by Michelle Graham. TAIR10: sulfate transporter 4.1 | chr5:4355412-4359490 REVERSE LENGTH=685
SoyBase E_val: 0 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0008272 GO-bp
Annotation by Michelle Graham. GO Biological Process: sulfate transport
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0008271 GO-mf
Annotation by Michelle Graham. GO Molecular Function: secondary active sulfate transmembrane transporter activity
SoyBase N/A ISS
GO:0015116 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sulfate transmembrane transporter activity
SoyBase N/A ISS
KOG0236
KOG
Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family)
JGI ISS
PTHR11814 Panther
SULFATE TRANSPORTER
JGI ISS
PTHR11814:SF46 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00916 PFAM
Sulfate transporter family
JGI ISS
PF01740 PFAM
STAS domain
JGI ISS
UniRef100_G7KVN8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Sulfate transporter n=1 Tax=Medicago truncatula RepID=G7KVN8_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233F124 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F124 related cluster n=2 Tax=unknown RepID=UPI000233F124
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g52270
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g52270
Paralog Evidence Comments
Glyma02g10590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g52270 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g286000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g52270
Coding sequences of Glyma18g52270
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g52270.1 sequence type=CDS gene model=Glyma18g52270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGATAACCTACGCATCCCCTAGCTTCTCCGACCTCCGCGCCATGCCGTCGACGGCGACCGCCGCGCGTCCCGTCAGGATCATTCCCCTGCAGCACCCGACCGCCACGACGTCGTCGCCGCAGCCGAACGCCGCCTTCTCGCGCTGGACGGCGAAGCTCCGGCGAATGACGTGGCTGGAGTGGATTGAATTCTTCCTCCCTTGCCTCCGCTGGATTCGCATCTACAACTGGCGCGAGTATTTCCAGGTCGATCTCATGGCCGGAATCACCGTCGGCGTCATGCTCGTTCCTCAGTCGATGTCGTATGCGAAATTGGCTGGACTTCAACCGATATATGGACTCTACTCTGGTTTTGTGCCCCTATTTGTATATGCCATATTTGGGTCTTCTCGCCAGCTTGCAGTAGGTCCAGTGGCATTGGTTTCTCTCTTGGTCTCTAATGTGCTGGGTAGCATAGCTGATTCATCCACTGAATTATACACAGAGCTGGCAATATTACTGTCCCTTATGGTTGGGATAATGGAGTGTATAATGGGACTCTTGAGGCTTGGATGGCTGATTCGTTTCATTAGCCATTCAGTGATTTCTGGCTTTACAACTGCTTCAGCTATTGTCATTGGTTTATCTCAAGCGAAATACTTCTTGGGGTATGATATAGATGGGAGTAGCAAGATCATTCCAGTAGTTAAGAGTATAATAGCTGGAGCAGATAAGTTTTCATGGCCTCCTTTTGTGATGGGATCCATTATGCTTGCAATACTGCTTGTCATGAAACACCTGGGAAAATCGAGGAAGTACTTGCGATTCTTGAGAGCTGCAGGTCCTCTTACAGCAGTAGTTCTGGGAACAACTTTTGCAAAAATATTTCATCCATCATCAATTTCTTTGGTGGGAGATATACCTCAAGGCCTACCAAAATTTTCTGTTCCAAAATCTTTTGAGTATGCACAGTCCTTAATTCCAACTGCTCTTCTCATAACTGGTGTGGCTATATTGGAATCAGTGGGAATTGCGAAGGCATTAGCAGCAAAGAATGGGTACGAGTTGGATTCAAATCAAGAGTTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATACCCCACAACAGGATCCTTTTCAAGGTCAGCTGTAAATCATGAAAGTGGTGCAAAATCTGGTGTATCTGGGATTGTTTCAGGAATTATAATGACCTGTGCACTTTTGTTTCTAACACCATTATTTGAGTACATACCTCAGTGTACCCTTGCTGCCATTGTGATCTCTGCTGTGATAGGTCTGGTAGATTATGATGAGGCCATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGGGTCCTTGTTGGGGTTGGGGTTTCACTTGCGTTTGTCATTCATGAGTCAGCAAATCCACATATTGCTGTTTTGGGTCGTTTGCCAGGGACAACTGTTTATAGGAATGTTAAACAGTATCCTGAAGCATATACATACAATGGAATTGTAATCGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATCAAGGACAGGTTGCGTGAATATGAAGTTGATGTTGATCGTTCTAAAAGACGTGGACCTGAGGTTGAAAGAATTTATTTCGTGATTCTAGAGATGGCACCTGTGACATACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCGGGTCTGGTGGAGTTGATAGGCAAAGAATGGTACTTTGTGAGAGTACATGATGCTGTTCAAGTTTGCTTGCAACATGTTCAAAGCTTGAAAGGAGCATCTAACAGTCCACAAGCACCATTCTCTTCAGTAGAGAACAAACCAAGTTTGTTTGCACGATTATCAAAAGAGAGAGTGGAGAAGCTTTCAATTACCGACTTGGAGTCTGGTAATGGCAGGCCTCCACTCCCCGAGGAGAGAGATTCCAAATTGGAGCCATTGTTGTCTAAAGATCATTGA
Predicted protein sequences of Glyma18g52270
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g52270.1 sequence type=predicted peptide gene model=Glyma18g52270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEITYASPSFSDLRAMPSTATAARPVRIIPLQHPTATTSSPQPNAAFSRWTAKLRRMTWLEWIEFFLPCLRWIRIYNWREYFQVDLMAGITVGVMLVPQSMSYAKLAGLQPIYGLYSGFVPLFVYAIFGSSRQLAVGPVALVSLLVSNVLGSIADSSTELYTELAILLSLMVGIMECIMGLLRLGWLIRFISHSVISGFTTASAIVIGLSQAKYFLGYDIDGSSKIIPVVKSIIAGADKFSWPPFVMGSIMLAILLVMKHLGKSRKYLRFLRAAGPLTAVVLGTTFAKIFHPSSISLVGDIPQGLPKFSVPKSFEYAQSLIPTALLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVSNVLGSFFSAYPTTGSFSRSAVNHESGAKSGVSGIVSGIIMTCALLFLTPLFEYIPQCTLAAIVISAVIGLVDYDEAIFLWRVDKKDFLLWTITSTTTLFLGIEIGVLVGVGVSLAFVIHESANPHIAVLGRLPGTTVYRNVKQYPEAYTYNGIVIVRVDAPIYFANTSYIKDRLREYEVDVDRSKRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKLRDIQIAISNPSPEVLLTLSRSGLVELIGKEWYFVRVHDAVQVCLQHVQSLKGASNSPQAPFSSVENKPSLFARLSKERVEKLSITDLESGNGRPPLPEERDSKLEPLLSKDH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
