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Report for Sequence Feature Glyma18g52260

Feature Type:gene_model
Chromosome:Gm18
Start:60913039
stop:60916109
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g52260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G24330AT Annotation by Michelle Graham. TAIR10: ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 | chr5:8295245-8296997 REVERSE LENGTH=349 SoyBaseE_val: 3.00E-169ISS
GO:0000087GO-bp Annotation by Michelle Graham. GO Biological Process: M phase of mitotic cell cycle SoyBaseN/AISS
GO:0000280GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear division SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009901GO-bp Annotation by Michelle Graham. GO Biological Process: anther dehiscence SoyBaseN/AISS
GO:0010389GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0051225GO-bp Annotation by Michelle Graham. GO Biological Process: spindle assembly SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0070734GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K27 methylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0046976GO-mf Annotation by Michelle Graham. GO Molecular Function: histone methyltransferase activity (H3-K27 specific) SoyBaseN/AISS
KOG1085 KOG Predicted methyltransferase (contains a SET domain) JGI ISS
PTHR10615Panther MYST-RELATED PROTEINS JGI ISS
PTHR10615:SF20Panther MYST-RELATED JGI ISS
PF00628PFAM PHD-finger JGI ISS
UniRef100_G7I3E6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lysine-specific demethylase 5C n=1 Tax=Medicago truncatula RepID=G7I3E6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N521UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N521_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g52260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52260
ParalogEvidenceComments
Glyma02g10605 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g285900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g52260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g52260
>Glyma18g52260.1   sequence type=CDS   gene model=Glyma18g52260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTCACTGGGTCGAAGAAGAACCCACGCTCCCAAATCTTCCTCCACCCTAAACGACGACGTTTCCTGCGAGGAATGCGGCGGAGGCCACTCTCCTTCGAAGCTTCTTCTCTGCGACAAATGCGACCGTGGCTACCACCTCTTCTGCCTCCGTCCCATTCTTCCCTCTGTCCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCTAAGTGTTTCCCTCTTGTGCAGACCAAAATCATTGACTTCTTTCGAATCCAACGCTCGCCCGAGGCATTGGCGAACCAAGACACGCGGAAGAAGCGAAAGAGGGGTGGGGGCTTGGTGGTTTCGAAGAAGAAGAGGAAGCTGTTGGCGTTCGTGCCGAGCGAGGATCCGAAGAGGAGATTGGAGCAAATGGCGTCGCTGGCGACGGCGTTGATCGCAACTGAAACGGAGTTCAGCAATGAGCTTACTTACATGCCTGCAATGGCGCCAAGGTCCGCTAATCGCCCTGCTCTTGAGCGCGGTGGAATGCAGGTCTTGTCAAAAGAAGACACCGAGACCTTAAACCTGTGCAAAAGTATGATGGAAAGAGGAGAATGGCCGCCTCTCATGGTTGTTTTTGATCCTCTAGAAGGCTTCACTGTAGAAGCAGATAGATCCATCAAAGATTTAACCATAATAACAGAATATGTTGGAGATGTAGACTTTTTAAAGAATAGGGAAAATGATGATGGAGATAGTATAATGACACTTCTCTCAGCTTCTGATCCTTCACGGACGCTTGTCATCTGTCCAGACAAACGAAGCAACATAGCTCGTTTCATTAACGGCATCAATAATCACACACCGGAAGGGAAAAAGAAGCAGAACTTGAAATGCGTGAGGTTTGATGTTGGAGGTGAATGTCGGGTTCTTTTAATTGCCAATAGAGATATTACAAAGGGGGAAAGGTTGTACTACGACTACAACGGAGATGAACATGAATATCCAACTGAACATTTTGTCTGA
Predicted protein sequences of Glyma18g52260
>Glyma18g52260.1   sequence type=predicted peptide   gene model=Glyma18g52260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLGRRRTHAPKSSSTLNDDVSCEECGGGHSPSKLLLCDKCDRGYHLFCLRPILPSVPKGSWFCPSCSNHKPKCFPLVQTKIIDFFRIQRSPEALANQDTRKKRKRGGGLVVSKKKRKLLAFVPSEDPKRRLEQMASLATALIATETEFSNELTYMPAMAPRSANRPALERGGMQVLSKEDTETLNLCKSMMERGEWPPLMVVFDPLEGFTVEADRSIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSRTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVGGECRVLLIANRDITKGERLYYDYNGDEHEYPTEHFV*






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