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Report for Sequence Feature Glyma18g52221

Feature Type:gene_model
Chromosome:Gm18
Start:60885160
stop:60890394
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39435AT Annotation by Michelle Graham. TAIR10: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related | chr2:16464806-16466492 REVERSE LENGTH=464 SoyBaseE_val: 8.00E-36ISS
PTHR21726Panther PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED JGI ISS
PTHR21726:SF16Panther UNKNOWN PROTEIN JGI ISS
UniRef100_B9SYA4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative n=1 Tax=Ricinus communis RepID=B9SYA4_RICCO SoyBaseE_val: 2.00E-55ISS
UniRef100_UPI000233F54EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F54E related cluster n=1 Tax=unknown RepID=UPI000233F54E SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g52221 not represented in the dataset

Glyma18g52221 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g10630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g285600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g52221.1   sequence type=CDS   gene model=Glyma18g52221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCCAAACAAGAAGCATCAAGTGTTATTTTAAACTTGATGGGTCTTGATAAAGTACCTACCCAACATCCCGTTAGAGATAAACAGAAAGTGCTCTCTGAGAATTACCTGCAGAAAGTTGCCTCTATTGGTGTCAGAAAGAAGCGTTCATCTTATCAGCATCATTCCTCTGGAATGAATACTAATGAAAAGGATGAATCGGAGGATGTTTTGAAAGTGGTTAAAGCACTAAGGCGAGGTAAGCAACATAACCCATCAAAGGGAAATGGGAAAGAGAATCCTAGTTCTTGCAAAAATTCTCATTTCCCTGATGGGCTGCTCCAAGAGATGTTTTATCCTAAAAGCATGAAACCATATCCTGAAATGAGGGAGAGAAAGAAAATATCATATCACATGAATTCTGATAAGCAGAGTTCAAGGCCTTTGAGTAAAGTTTCAGAGGAGATTTCTATGCCATCGGGAAATGTTGCAAATGGAGTTTTAGGTACTGCTTCAAGTTCGTTTTTCAGAGGGAATGAAGCATTTTCCAATGATAATATGCTGAAGCCTGCTTCAAATATTTCAGTTAATGAGATCCAATGCAATTCCCCTTTCCTCTGTTCTGATACCAGGACCAACACTTTGGCACAGGGGGATGCGACTGAAAAATTGCAAGAACTTGGACGGTGTGGTCAAGACTGTATACATAACCAGTTGCCTATGATTTCTGAACATGGAAATAGAGCAGGAAATTTGAATCGTCGAAGTGGTTATAGCTATGATAAAATTATAAGGAACATTAGATTCAAGGCTGGTGTTAACTATAGCTTTTCCAGAAGAGTGGCAATACCTCTTTGTACAGCTTCAGTTATTGCTGATAACTGTGGAACTATGAATCAGGATATCTTGTTTCAGAGATATTGGGGTTTGAGAAAGAATGCATCTGCAAATCGATTATCATGGAAGTCAAAGAATCAAAATGTTAACCAGAAAGAATGTTTGGAAGATGTGAACCTCAGTCCTGGCCATGAGAAATTCCCTTCTCTTTCCTCTTATTTCAATAGTAATCACACTGAAGAGAATTCTACAGGCCATACATCAGAGAAGAGACGTTATGGGAGCAATTTGTCTGATAAGGTAACTATGCCTCCTCAATTGTCAAGTTCTAGTCCTTCTTCCGCCTTGATAGACTGTCAGATCTTGCAAGAGAGATGCTCAGCAAATGATGAAGTGAGGAACAAAACATATGAAGACAGCAGTATGTCTAAGCAACATGTTGTGTCTCCTGATTCATCAGTTGAATTCTTGGCATCTGATGCAACAAATGAGGTTGTTGGCAGGTCACATAATAATCCAACCAAGCGTCAATATAAGTCAGCAGCCTTCATTTTGTCACAAGAAATTGATTCTCTGAGTCACACATATGCTTCAAAGAAACAGTTACAGGATACATCAGACTTTCAAGAAGATTCCGTTCATTCACTTTGCTCTGAGGCTGACCCAGATTCCATAGGTAGCTTTGAGGAGGCATACGAACCTAGTCCAATTTCAGTTTTGGATCCCTTATTTGGTGAAGACAGCTCTAAATGTGGCAATCATGTATATGATTCCTCTGAAGTGGATGATGAAGAATATGGTTTGAATGTTTCAAGTGATGAAGATTGTGAGAATGAATCTGTAGGTGACTCCGAAGAAAAGAAAGATGTAGCAGGATTATTTAGAGCTGAAGAAAGTAGGGATTTCTCGTATATTGTTGAGGTCTTAACCGAGGCAGGTATAAGTAATAGGAGCTTGTTTACAGACTTTTCAACATGGCACTCTGCAGAATGTCCTATTAGCCCTTCTGTCTTCAAAATCCTGGAAAAAAAATTTGGCGAGCAGCAACTTTGGAAGAGATCTGAAAGGAAACTTCTCTTTGATTGCATTAACCTAGGGCTGCTGGAGATTCTGCAGCCATATTTGTACATCCCAGTGTGGGAAAAGCCCATGTCAAGAAGGTTGAATACTGAACCAAGCCAGGACATGATTGAGGAGGAGATGTGGGGGTTGCTTGTTGCACAGGAAAAGAAAGCTAGTAAAGGGTTAGCAGACAGTATGCTCGAAGGGGAGATTAGGTGGATAGAACTAGTTGAAGATGTTGAAGATATTGTTAGAGAGATAGTGAAGTTGTTAATAGAGGAGCTCACAAACGAGATAGTTAGCTTGGAGAATTTTTGA

>Glyma18g52221.1   sequence type=predicted peptide   gene model=Glyma18g52221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESKQEASSVILNLMGLDKVPTQHPVRDKQKVLSENYLQKVASIGVRKKRSSYQHHSSGMNTNEKDESEDVLKVVKALRRGKQHNPSKGNGKENPSSCKNSHFPDGLLQEMFYPKSMKPYPEMRERKKISYHMNSDKQSSRPLSKVSEEISMPSGNVANGVLGTASSSFFRGNEAFSNDNMLKPASNISVNEIQCNSPFLCSDTRTNTLAQGDATEKLQELGRCGQDCIHNQLPMISEHGNRAGNLNRRSGYSYDKIIRNIRFKAGVNYSFSRRVAIPLCTASVIADNCGTMNQDILFQRYWGLRKNASANRLSWKSKNQNVNQKECLEDVNLSPGHEKFPSLSSYFNSNHTEENSTGHTSEKRRYGSNLSDKVTMPPQLSSSSPSSALIDCQILQERCSANDEVRNKTYEDSSMSKQHVVSPDSSVEFLASDATNEVVGRSHNNPTKRQYKSAAFILSQEIDSLSHTYASKKQLQDTSDFQEDSVHSLCSEADPDSIGSFEEAYEPSPISVLDPLFGEDSSKCGNHVYDSSEVDDEEYGLNVSSDEDCENESVGDSEEKKDVAGLFRAEESRDFSYIVEVLTEAGISNRSLFTDFSTWHSAECPISPSVFKILEKKFGEQQLWKRSERKLLFDCINLGLLEILQPYLYIPVWEKPMSRRLNTEPSQDMIEEEMWGLLVAQEKKASKGLADSMLEGEIRWIELVEDVEDIVREIVKLLIEELTNEIVSLENF*







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