Glyma18g52160 - SoyBase

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Report for Sequence Feature Glyma18g52160

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60857853
stop:	60861716
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35450	AT	Annotation by Michelle Graham. TAIR10: catalytics;hydrolases \| chr2:14903201-14905361 REVERSE LENGTH=346	SoyBase	E_val: 3.00E-149	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PF04909	PFAM	Amidohydrolase	JGI		ISS
UniRef100_B9RMA4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aminocarboxymuconate-semialdehyde decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9RMA4_RICCO	SoyBase	E_val: 1.00E-154	ISS
UniRef100_I1N512	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N512_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g52160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g285000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g52160

Limit To All Plant Sequences

>Glyma18g52160.2   sequence type=transcript   gene model=Glyma18g52160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCACATAACAGGTGTATATTGAAGTATGAGGCTGTACTTTTCTTTTACTACACTGCCATGGCCGCTGCCAGCCTGGTGTCCCTTTGGGTCCTCTTCTCCGGCGTTGCTTTGTTTCCTGGAAGTTGCTCGCCGCAGCATCATAACATTCTTAAACTTAAAATGATCTCCCCCTTCACTCATAACCTTTCAACCTCCAAAATCATTGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAGGCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAATCTTCATTTTTTGCTCCAGAATATGGAGGAGGCAGGAGTAGATGGCGTTCTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAGTGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCCAACTGATGATGGAAGTGGACTGAAGCAGTTTGAAGATCTTGTCTTAAAGGATGGTTATCGTGCTGTTCGATTCAACCCAGAATTGTGGCCAGCTGGGGAAAAGATGACAAATAAAGTTGGGAAGGCAATTTTCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCATCAACAGTTGTATTGATTGATCACTTGGGCTTCATCAAACCACCATTGAATGAAGAAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCTTATCTGGATTTGGCTCCTCTTTTGTCCCAAGTTGTCGCTAGCTTTGGTGCTAACCGTGTTATGTGGGGCAGGTAACTTCCTATCATATATGTTTTCAAATAAAATGGGAAAAGAGGGTGAGACA

>Glyma18g52160.3   sequence type=transcript   gene model=Glyma18g52160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCACATAACAGGTGTATATTGAAGTATGAGGCTGTACTTTTCTTTTACTACACTGCCATGGCCGCTGCCAGCCTGGTGTCCCTTTGGGTCCTCTTCTCCGGCGTTGCTTTGTTTCCTGGAAGTTGCTCGCCGCAGCATCATAACATTCTTAAACTTAAAATGATCTCCCCCTTCACTCATAACCTTTCAACCTCCAAAATCATTGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAGGCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAATCTTCATTTTTTGCTCCAGAATATGGAGGAGGCAGGAGTAGATGGCGTTCTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAGTGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCCAACTGATGATGGAAGTGGACTGAAGCAGTTTGAAGATCTTGTCTTAAAGGATGGTTATCGTGCTGTTCGATTCAACCCAGAATTGTGGCCAGCTGGGGAAAAGATGACAAATAAAGTTGGGAAGGCAATTTTCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCATCAACAGTTGTATTGATTGATCACTTGGGCTTCATCAAACCACCATTGTAAGCTATATTATATCATTGTTTCAAAGG

Coding sequences of Glyma18g52160

Limit To All Plant Sequences

>Glyma18g52160.1   sequence type=CDS   gene model=Glyma18g52160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCTGCCAGCCTGGTGTCCCTTTGGGTCCTCTTCTCCGGCGTTGCTTTGTTTCCTGGAAGTTGCTCGCCGCAGCATCATAACATTCTTAAACTTAAAATGATCTCCCCCTTCACTCATAACCTTTCAACCTCCAAAATCATTGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAGGCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAATCTTCATTTTTTGCTCCAGAATATGGAGGAGGCAGGAGTAGATGGCGTTCTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAGTGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCCAACTGATGATGGAAGTGGACTGAAGCAGTTTGAAGATCTTGTCTTAAAGGATGGTTATCGTGCTGTTCGATTCAACCCAGAATTGTGGCCAGCTGGGGAAAAGATGACAAATAAAGTTGGGAAGGCAATTTTCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCATCAACAGTTGTATTGATTGATCACTTGGGCTTCATCAAACCACCATTGAATGAAGAAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCTTATCTGGATTTGGCTCCTCTTTTGTCCCAAGTTGTCGCTAGCTTTGGTGCTAACCGTGTTATGTGGGGCAGTGATTTTCCATATGCTGCTGCTGAATGTGGCTACAAAGCAGCCAAAGAAGCAGTGCTTCTTATTGCCAACCAGATCTCTTTGCCTCCGTCTGATTTAGAGTGGATCATGGGGAGAACTGTTGCACAACTCTTCCCAAACCAATGGACTGATGCTAAGCAAGGTTTTCATAGAGAGCGGGAGTGA

>Glyma18g52160.2   sequence type=CDS   gene model=Glyma18g52160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCTGCCAGCCTGGTGTCCCTTTGGGTCCTCTTCTCCGGCGTTGCTTTGTTTCCTGGAAGTTGCTCGCCGCAGCATCATAACATTCTTAAACTTAAAATGATCTCCCCCTTCACTCATAACCTTTCAACCTCCAAAATCATTGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAGGCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAATCTTCATTTTTTGCTCCAGAATATGGAGGAGGCAGGAGTAGATGGCGTTCTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAGTGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCCAACTGATGATGGAAGTGGACTGAAGCAGTTTGAAGATCTTGTCTTAAAGGATGGTTATCGTGCTGTTCGATTCAACCCAGAATTGTGGCCAGCTGGGGAAAAGATGACAAATAAAGTTGGGAAGGCAATTTTCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCATCAACAGTTGTATTGATTGATCACTTGGGCTTCATCAAACCACCATTGAATGAAGAAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCTTATCTGGATTTGGCTCCTCTTTTGTCCCAAGTTGTCGCTAGCTTTGGTGCTAACCGTGTTATGTGGGGCAGGTAA

>Glyma18g52160.3   sequence type=CDS   gene model=Glyma18g52160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCTGCCAGCCTGGTGTCCCTTTGGGTCCTCTTCTCCGGCGTTGCTTTGTTTCCTGGAAGTTGCTCGCCGCAGCATCATAACATTCTTAAACTTAAAATGATCTCCCCCTTCACTCATAACCTTTCAACCTCCAAAATCATTGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAGGCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAATCTTCATTTTTTGCTCCAGAATATGGAGGAGGCAGGAGTAGATGGCGTTCTCATTGTGCAGCCAATATTTCATAAATTTGATCATAGTTATGTCACAAGTGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCCAACTGATGATGGAAGTGGACTGAAGCAGTTTGAAGATCTTGTCTTAAAGGATGGTTATCGTGCTGTTCGATTCAACCCAGAATTGTGGCCAGCTGGGGAAAAGATGACAAATAAAGTTGGGAAGGCAATTTTCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCATCAACAGTTGTATTGATTGATCACTTGGGCTTCATCAAACCACCATTGTAA

Predicted protein sequences of Glyma18g52160

Limit To All Plant Sequences

>Glyma18g52160.1   sequence type=predicted peptide   gene model=Glyma18g52160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAASLVSLWVLFSGVALFPGSCSPQHHNILKLKMISPFTHNLSTSKIIDSHLHIWASPQEASEFPYAPGQEPPVPGNLHFLLQNMEEAGVDGVLIVQPIFHKFDHSYVTSALKKYPTKFVGCCLANPTDDGSGLKQFEDLVLKDGYRAVRFNPELWPAGEKMTNKVGKAIFQRAGELNVPVGFLCMKGIGLYMSEIEQLCTEFPSTVVLIDHLGFIKPPLNEEEGLVFSQLLNLSRFPKVYVKFSSLFQVSREKFPYLDLAPLLSQVVASFGANRVMWGSDFPYAAAECGYKAAKEAVLLIANQISLPPSDLEWIMGRTVAQLFPNQWTDAKQGFHRERE*

>Glyma18g52160.2   sequence type=predicted peptide   gene model=Glyma18g52160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAASLVSLWVLFSGVALFPGSCSPQHHNILKLKMISPFTHNLSTSKIIDSHLHIWASPQEASEFPYAPGQEPPVPGNLHFLLQNMEEAGVDGVLIVQPIFHKFDHSYVTSALKKYPTKFVGCCLANPTDDGSGLKQFEDLVLKDGYRAVRFNPELWPAGEKMTNKVGKAIFQRAGELNVPVGFLCMKGIGLYMSEIEQLCTEFPSTVVLIDHLGFIKPPLNEEEGLVFSQLLNLSRFPKVYVKFSSLFQVSREKFPYLDLAPLLSQVVASFGANRVMWGR*

>Glyma18g52160.3   sequence type=predicted peptide   gene model=Glyma18g52160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAASLVSLWVLFSGVALFPGSCSPQHHNILKLKMISPFTHNLSTSKIIDSHLHIWASPQEASEFPYAPGQEPPVPGNLHFLLQNMEEAGVDGVLIVQPIFHKFDHSYVTSALKKYPTKFVGCCLANPTDDGSGLKQFEDLVLKDGYRAVRFNPELWPAGEKMTNKVGKAIFQRAGELNVPVGFLCMKGIGLYMSEIEQLCTEFPSTVVLIDHLGFIKPPL*

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