Glyma18g52120 - SoyBase

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Report for Sequence Feature Glyma18g52120

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60840291
stop:	60843616
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69040	AT	Annotation by Michelle Graham. TAIR10: ACT domain repeat 4 \| chr1:25958196-25960079 FORWARD LENGTH=451	SoyBase	E_val: 0	ISS
GO:0006521	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009735	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016597	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid binding	SoyBase	N/A	ISS
PTHR13734	Panther	TRNA-NUCLEOTIDYLTRANSFERASE 1	JGI		ISS
PTHR13734:SF23	Panther	ACR3 (ACT DOMAIN REPEAT 3)	JGI		ISS
PF01842	PFAM	ACT domain	JGI		ISS
UniRef100_B9RMA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RMA6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N509	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N509_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52120

Paralog	Evidence	Comments
Glyma02g10690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g284700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52120

Limit To All Plant Sequences

>Glyma18g52120.1   sequence type=CDS   gene model=Glyma18g52120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTGTTGGTACTCTCCTCACCCTCTCCATGATGAATTCGAGAAGCTTGTCATTCGAATGAACCCCCCAAGAGTTGCTGTGGATAACATTTCAAGCGGAACAGACACTGTCATAAAGGTTGATAGCGCGAACAAGCGTGGGAGCTTGTTGGAGGTGGTTCAGGTTCTCACTGATATGAATCTCAGTGTTAGAAGAGCTTATATTTCCTCTGATGGAGAATGGTTCATGGATGTTTTTCATGTCACGGATCAAAATGGGAAAAAGTTTATGCAAGATGATGTTGCTGACCGCATTCAACAGTCACTGGGTCCAAGAGCCTCTAGTTTTCGATCCTTGAGAAGGTCTGTTGGGGTCCAAGCTGAAGCAGAACATACAACCATTGAATTAACTGGAAGAGACAGGCCAGGATTGCTTTCAGAAGTGTTTGCTGTTCTTGCAGACCTCAAATGCAATGTGGTAGCAGCAGAAGTCTGGACCCACAATTCAAGAATGGCATCTGTTGTTTACATCACAGACGAGGCGACGGGATTGTCCATTGACGATCCGGATCGCCTTGCCAAGATTAAGCAGCTTCTACTGTATGTGCTGAAAGGAGACATAGATAAGAAGAGTGCTAACACTGCTGTTTCTGTTGGTTCTACTCACAAGGATAGGAGGCTGCATCAGTTGATGTATGCCGACCGTGATTATGACGTAGATGATGGGGATTCTGGGTCAACAAGTGACAGGAACAAGCTCCTAGTAACTGTTGATGATTGCATAGATAAGGGATACACTGTTGTGAACTTGAGGTGTCCAGACAGACCAAAGTTACTGTTTGATACCGTGTGCACACTCACAGACATGCAGTATGTTGTGTACCATGGAACTGTCATTGCTGAAGGACCAGAGGCATATCAGGAATATTATATAAGGCATGTAGATGGAAGTCCTATCAGTTCTGAAGCAGAAAGGCAAAGAGTGATTCATTGTTTGGAGGCTGCTGTTAGGAGACGAACTTCTGAGGGTATAAAGCTAGAATTATGTGGGGAAGACAGGGTTGGCCTTCTGTCTGATGTAACTCGCATCTTTAGAGAAAATGGTCTTTCAGTCAACCGTGCTGAAGTTACAACCAGGGGCAGCCAAGCCATGAATGTTTTCTATGTGACTGATGTATCTGGAAATCCAGTTAAGAGTGAAACAATTGAAACAGTTCGAAAAGAGATTGGCTTGACCATACTGCATGTAAAAGATGATGTCTGCTCTAAACCTCCACCGCAAGAGAGTGGAAAATTCTCTCTGTCTAATCTCTTTCGGTCAAGCTCTGAGAAATTTCTCTACAACTTGGGTTTGATGAAGTCTTATTCTTGA

Predicted protein sequences of Glyma18g52120

Limit To All Plant Sequences

>Glyma18g52120.1   sequence type=predicted peptide   gene model=Glyma18g52120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDCWYSPHPLHDEFEKLVIRMNPPRVAVDNISSGTDTVIKVDSANKRGSLLEVVQVLTDMNLSVRRAYISSDGEWFMDVFHVTDQNGKKFMQDDVADRIQQSLGPRASSFRSLRRSVGVQAEAEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDEATGLSIDDPDRLAKIKQLLLYVLKGDIDKKSANTAVSVGSTHKDRRLHQLMYADRDYDVDDGDSGSTSDRNKLLVTVDDCIDKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVYHGTVIAEGPEAYQEYYIRHVDGSPISSEAERQRVIHCLEAAVRRRTSEGIKLELCGEDRVGLLSDVTRIFRENGLSVNRAEVTTRGSQAMNVFYVTDVSGNPVKSETIETVRKEIGLTILHVKDDVCSKPPPQESGKFSLSNLFRSSSEKFLYNLGLMKSYS*

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