Glyma18g52110 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g52110

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60823663
stop:	60832094
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13110	AT	Annotation by Michelle Graham. TAIR10: glucose-6-phosphate dehydrogenase 2 \| chr5:4158952-4161640 FORWARD LENGTH=596	SoyBase	E_val: 0	ISS
GO:0006006	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose metabolic process	SoyBase	N/A	ISS
GO:0009051	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt, oxidative branch	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004345	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucose-6-phosphate dehydrogenase activity	SoyBase	N/A	ISS
GO:0050661	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADP binding	SoyBase	N/A	ISS
KOG0563	KOG	Glucose-6-phosphate 1-dehydrogenase	JGI		ISS
PTHR23429	Panther	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE (G6PD)	JGI		ISS
PF00479	PFAM	Glucose-6-phosphate dehydrogenase, NAD binding domain	JGI		ISS
PF02781	PFAM	Glucose-6-phosphate dehydrogenase, C-terminal domain	JGI		ISS
UniRef100_I1N508	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Glycine max RepID=I1N508_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1N508	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Glycine max RepID=I1N508_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52110

Paralog	Evidence	Comments
Glyma02g10710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g284600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52110

Limit To All Plant Sequences

>Glyma18g52110.1   sequence type=CDS   gene model=Glyma18g52110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCACGCTTTATTCAACGCCTTGTCGTTCACTGGCTACTTCATCCTCCTCTTCCTCGTCGTTGCAACCCTGCCCTCTGTCGTCTAACCTCGCTTACCCTCAACGCGTCACCTTCTCACAGCGCTTTCTCGCCTCCAAGGTCTCTCTCAAATCTCAACCCCAACCGTATCAGATTCCCGTTCACACCCAGCAGCCGGAAGGTACAGTGACAGCTGCTGTGACCCCTGTTGAAAATGGCACTTCTCACAAGCAGTTGAAGGCTGACTTATTGTCTCTTAAGTCCCCAGATGAGTCTGAAGACGGTTTTGAAAAGGATGAAAATGAGTCCAGTGTTAGTATTACTGTTGTTGGAGCCTCTGGAGACCTTGCTAAGAAGAAGATATTTCCGGCTCTCTTTGCGCTTTACTATGAGGATTGTCTCCCTAAGCACTTCACCATCTATGGTTATGCACGAAGTAAGATGACTGATGCAGAACTGAGAAATATGGTTAGCAAGACCCTCACTTGTAGAATTGATAAGAGAGAGAACTGCAATGAGAAGATGGACCAATTTCTAATAAGATGTTTCTACCATTCTGGTCAATATGATTCTCAGGAAAACTTTGCAGCACTAGACAAGAAGCTGAAGGAACATGAGGGTGGGAGAACTTCTAATCGCCTGTTTTATCTTTCAATTCCTCCTAATATATTCATAGATGCTGTTAAATGTGCAAGCTTGTCAGCTTCTTCTGGTAATGGTTGGACCAGGGTTATTGTTGAAAAGCCTTTTGGCCGTGATTCAGAATCTTCGGCTGCATTAACAAAATCACTCAAGCAGTATCTGACAGAGGATCAAATTTTCAGGATTGACCACTATCTTGGGAAAGAGCTTGTGGAAAATCTTTCTGTTCTCCGATTCTCAAATCTCATCTTTGAACCATTATGGTCAAGGCAGTATATAAGAAATGTACAGTTGATATTCTCAGAAGATTTTGGCACTGAAGGACGTGGCGGGTACTTTGACCATTATGGTATCATAAGAGACATTATGCAGAATCATTTACTTCAAATACTAGCACTCTTTGCGATGGAAACCCCTGTTAGTTTGGATGCAGAGGATATTAGAAATGAAAAGGTCAAGGTTCTTCGTTCGATGAGACCCCTACGACTTGAGGATGTGGTTATAGGTCAGTATAAGAGCCACACTAGAGGAGGAGTTACATATCCAGCATACGTTGATGATAAAACTGTACCAAGCGGCAGCTTAACTCCAACATTTGCTGCAGCTGCCCTCTTCATAGATAATGCAAGATGGGATGGGGTACCTTTTCTGATGAAGGCTGGGAAAGCATTACACAACAAAAGAGCTGAGATACGGGTACAGTTCAGGCATGTGCCAGGTAATCTGTACAATCGGAATTTCGGTACTGATCTTGATCGGGCTACAAATGAACTTGTTATAAGAGTTCAGCCTGATGAGGCTATTTATCTGAAGATAAACAACAAAGTTCCGGGTCTGGGAATGAAGTTGGATCGCAGTAATCTCAATCTTCACTACGCTGCAAGATATTCAAAGGAGATTCCAGATGCATATGAAAGGTTACTTCTGGATGCCATTGAAGGAGAAAGAAGACTCTTCATTCGTAGTGATGAACTGGATGCTGCTTGGTCACTCTTTACACCTGTACTGAAGGAGCTTGAAGAGAAGAAGATAATTCCAGAGTACTATCCTTATGGTAGTAGGGGTCCTGTTGGTGCTCACTATCTTGCAGCCAGACACAACGTGCGATGGGGTGACCTTGGGACAGACGTAGACCATTAA

Predicted protein sequences of Glyma18g52110

Limit To All Plant Sequences

>Glyma18g52110.1   sequence type=predicted peptide   gene model=Glyma18g52110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTLYSTPCRSLATSSSSSSSLQPCPLSSNLAYPQRVTFSQRFLASKVSLKSQPQPYQIPVHTQQPEGTVTAAVTPVENGTSHKQLKADLLSLKSPDESEDGFEKDENESSVSITVVGASGDLAKKKIFPALFALYYEDCLPKHFTIYGYARSKMTDAELRNMVSKTLTCRIDKRENCNEKMDQFLIRCFYHSGQYDSQENFAALDKKLKEHEGGRTSNRLFYLSIPPNIFIDAVKCASLSASSGNGWTRVIVEKPFGRDSESSAALTKSLKQYLTEDQIFRIDHYLGKELVENLSVLRFSNLIFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRPLRLEDVVIGQYKSHTRGGVTYPAYVDDKTVPSGSLTPTFAAAALFIDNARWDGVPFLMKAGKALHNKRAEIRVQFRHVPGNLYNRNFGTDLDRATNELVIRVQPDEAIYLKINNKVPGLGMKLDRSNLNLHYAARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSLFTPVLKELEEKKIIPEYYPYGSRGPVGAHYLAARHNVRWGDLGTDVDH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain