Glyma18g52060 - SoyBase

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Report for Sequence Feature Glyma18g52060

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60780609
stop:	60784802
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10840	AT	Annotation by Michelle Graham. TAIR10: translation initiation factor 3 subunit H1 \| chr1:3607885-3610299 REVERSE LENGTH=337	SoyBase	E_val: 0	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005852	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation initiation factor 3 complex	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
KOG1560	KOG	Translation initiation factor 3, subunit h (eIF-3h)	JGI		ISS
PTHR10410	Panther	JUN ACTIVATION DOMAIN BINDING PROTEIN	JGI		ISS
PTHR10410:SF3	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 3	JGI		ISS
PF01398	PFAM	Mov34/MPN/PAD-1 family	JGI		ISS
UniRef100_A2Q5B8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit n=1 Tax=Medicago truncatula RepID=A2Q5B8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0000E6475E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0000E6475E related cluster n=1 Tax=unknown RepID=UPI0000E6475E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52060

Paralog	Evidence	Comments
Glyma02g10760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g284200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g52060

Limit To All Plant Sequences

>Glyma18g52060.2   sequence type=transcript   gene model=Glyma18g52060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGCTTTAATCGTTTTTTTCTGTATTCTGTCTCTGTTTCTCCTTATATTTATATTTTAATTTTAAAAAATAAAAATTGGGCTAACTGTAATTTTAGGTGTGGACTATTTGAGCCCAACTCTAAGCAAAACCCCTTCTTCTTCCTCTTGCTCCGGCGTTAGGGTTTCTTCCTCTTTCAAACTCCATCGCAGATTCTTCGCTCCTTTCCATTGATTCAAAACATGGCTACCACTCCTGCCAGATCTTTCCTCCAAGTCGCCGCAACGGAGGAGGCTGCGCCGCCTCTCAGAGTCGTCCAGATTGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCGCCTTCTTTAGTCACTGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGCTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCCAATTATCAGCTTGAAATGATGAGATGCCTGAGGGAGGTTAATGTTGACAACAACACAGTTGGATGGTACCAGTCTACATTGCTTGGCTCCTTCCAGACTGTGGAGCTTATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTTCTAGCTCTGAAGGCATTGAAGCTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAATTTTACTGGAGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCAATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTTATGACAGAGCTGGAACCTGATACTCCAGTCACCCAGTGTGATTATGATCGTTTGCAATTGTCAACCAGTTCATTGATGGAGAGGAATACTGAATTTTTGATTGAATGCATGGATGACTTGTCACTAGAACAACAAAAGGTTCTTTTAGGTCTTCATTTATTTTGTGTGCTGTTTTAGAATGTATTTGACTGAAATTTCTTCTATTTTAGTTCCAATTCTATTATCGAAGCTTGTCTCGTCAACAAGCTCAGCAGCAAGCATGGCTTCAAAAGAGAAGGACGGAGAACATGGCTCGTAAAGCTGCTGGAGAAGAACCTTTGCCAGAGGAAGATCCTTCAAATCCCATTTTCAAGCCGCTCCCAGAGCCTTCACGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAACCAAATCAATGGGGTGTCAGGGCAGAGCTTTAACAGACTCTATTTGATGAAGGCTTTGCATGAGGATTGATAAGGCAATTTTTGTTTGTCATTCTGATGGTTTGATCCAATTTCTTTTCCATATAGGATGAGAATTTTATGGCGAATTTGGTAGTATATTAGAGGATCACGCTTGTAAGGCGACGTAATTTTTGTTTATTTTATGAAACCCATCCAATTGTATTGAGTATAATCTGTTATTGAATATTTAGAGATACATGCAGTGCCACTTGCTGCTTTTTATCTATGTTACAAAATTTGGCATCCAGTTATATTAACCAACTACTTTAGTTAATTTCTGTGGAAAGTATTTTTACCAATCACAATGCGAATAGTGAAACAATCACAACTAGAAGTTCTCGCTTCATCATTTTT

Coding sequences of Glyma18g52060

Limit To All Plant Sequences

>Glyma18g52060.1   sequence type=CDS   gene model=Glyma18g52060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCACTCCTGCCAGATCTTTCCTCCAAGTCGCCGCAACGGAGGAGGCTGCGCCGCCTCTCAGAGTCGTCCAGATTGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCGCCTTCTTTAGTCACTGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGCTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCCAATTATCAGCTTGAAATGATGAGATGCCTGAGGGAGGTTAATGTTGACAACAACACAGTTGGATGGTACCAGTCTACATTGCTTGGCTCCTTCCAGACTGTGGAGCTTATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTTCTAGCTCTGAAGGCATTGAAGCTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAATTTTACTGGAGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCAATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTTATGACAGAGCTGGAACCTGATACTCCAGTCACCCAGTGTGATTATGATCGTTTGCAATTGTCAACCAGTTCATTGATGGAGAGGAATACTGAATTTTTGATTGAATGCATGGATGACTTGTCACTAGAACAACAAAAGTTCCAATTCTATTATCGAAGCTTGTCTCGTCAACAAGCTCAGCAGCAAGCATGGCTTCAAAAGAGAAGGACGGAGAACATGGCTCGTAAAGCTGCTGGAGAAGAACCTTTGCCAGAGGAAGATCCTTCAAATCCCATTTTCAAGCCGCTCCCAGAGCCTTCACGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAACCAAATCAATGGGGTGTCAGGGCAGAGCTTTAACAGACTCTATTTGATGAAGGCTTTGCATGAGGATTGA

>Glyma18g52060.2   sequence type=CDS   gene model=Glyma18g52060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCACTCCTGCCAGATCTTTCCTCCAAGTCGCCGCAACGGAGGAGGCTGCGCCGCCTCTCAGAGTCGTCCAGATTGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCGCCTTCTTTAGTCACTGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGCTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCCAATTATCAGCTTGAAATGATGAGATGCCTGAGGGAGGTTAATGTTGACAACAACACAGTTGGATGGTACCAGTCTACATTGCTTGGCTCCTTCCAGACTGTGGAGCTTATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTTCTAGCTCTGAAGGCATTGAAGCTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAATTTTACTGGAGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCAATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTTATGACAGAGCTGGAACCTGATACTCCAGTCACCCAGTGTGATTATGATCGTTTGCAATTGTCAACCAGTTCATTGATGGAGAGGAATACTGAATTTTTGATTGAATGCATGGATGACTTGTCACTAGAACAACAAAAGGTTCTTTTAGGTCTTCATTTATTTTGTGTGCTGTTTTAG

Predicted protein sequences of Glyma18g52060

Limit To All Plant Sequences

>Glyma18g52060.1   sequence type=predicted peptide   gene model=Glyma18g52060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTPARSFLQVAATEEAAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNTEFLIECMDDLSLEQQKFQFYYRSLSRQQAQQQAWLQKRRTENMARKAAGEEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED*

>Glyma18g52060.2   sequence type=predicted peptide   gene model=Glyma18g52060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTPARSFLQVAATEEAAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNTEFLIECMDDLSLEQQKVLLGLHLFCVLF*

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