Glyma18g52040 - SoyBase

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Report for Sequence Feature Glyma18g52040

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60760610
stop:	60766351
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56190	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr5:22742563-22744909 FORWARD LENGTH=441	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
PTHR22847	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PTHR22847:SF187	Panther	GAMYB-BINDING PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7J0E1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein-like protein n=1 Tax=Medicago truncatula RepID=G7J0E1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N502	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N502_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52040

Paralog	Evidence	Comments
Glyma02g10780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g284000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52040

Limit To All Plant Sequences

>Glyma18g52040.1   sequence type=CDS   gene model=Glyma18g52040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCGACCATGACATGTACCATTTTGATCACATGGACGAAGACGATTTTTTTGACGAAATTGATGACCAAAACCATGGTAGGGGTGTTGGGGATGCTGCTCTTGATGAATATGAGATGCTTACTAAGGTGACTGATACAACAGCTGCTCAAGCAAGAAAGGGAAAGGACATTCAGGGAATTCCATGGGAAAGTTTGAACATATCTAGGGAGAGGTATAGATTGACAAGGCTTGAGCAATATAGGAATTTTGAGAACATTCTTAAATCTGGGGATGCTGTGGACAAGGAGTGCAAGCAAATCGAGAAGGGTGGGAATTACTATGAATTCTTCTATAATACAAGAATGGTTAAGCCTACTATCCTTCATTTTCAGCTGAGAAACTTAGTATGGGCAACTTCAAAACATGATGTCTACCTTATCTCCAACTACTCTGTTAATCACTGGTCATCATTAAGTGGTAATTTGTCTGAGATAATCAATTTTGCTGGGCATGTGGCACCGGCCCCTACTGAGAGATATGCAGGAAATTTGTTGGAAGGATTTTCTCAGACCCAGATTAGCACATTGGCTGTCAAGGATAATCTTCTTGTTGCTGGTGGTTTCCAAGGAGAGCTTACTTGTAAGCGTTTGAATAAGAAAGGAGTAAGCTTTTGTACACGGACCACACATGATGATAATGCTATATCAAATGCAGTTGAAATATATGACAGCTTGAGTGGTGCAACGCATATTATTGCCTCCAATAATGATTGTGGTGTGAGAGAATATGACACAGAAAGGTTTCAGCCTTTGAATAACTTCCAGTTCTCTTGGCCAGTGAATCACACATCAATCAGTCCAGACCGGAAGCTTATGACTGTTGTTGGAGATAACCTGGATGGACTGCTAGTGGATCCTCAAAATGGAAAGACTGTTGCAACTTTTGTTGGTCATCGAGATTACTCTTTTGCTTCTGCATGGCATCCCGATGGACGTACCTTTGCAACGGGGAATCAAGACAAGACTTGCAGAGTATGGGATGTTAGACACTTATCATCTCCTACTGCCATTCTCAAGAATAACCTAGGGGCAACCCGGTCTATTCGGTTTTCTTCTGATGGTCAATATATGGTGGTTGCTGAGCCTGCAGATTTTGTGCATGTTTATAGCACAAAGGCAGACTACAGAAAACGTCAAGAAATTGATTTCTTTGGGGAAATTTCTGGGGTTTCTCTGAGCCCTGATGATGAGTGTATATATATTGGAATCTGGGACCGGACTTATGCAAGCTTGCTTCAGTATAATAGGAAGCACCAATATAAATATCTTGATGCATACTGA

Predicted protein sequences of Glyma18g52040

Limit To All Plant Sequences

>Glyma18g52040.1   sequence type=predicted peptide   gene model=Glyma18g52040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPDHDMYHFDHMDEDDFFDEIDDQNHGRGVGDAALDEYEMLTKVTDTTAAQARKGKDIQGIPWESLNISRERYRLTRLEQYRNFENILKSGDAVDKECKQIEKGGNYYEFFYNTRMVKPTILHFQLRNLVWATSKHDVYLISNYSVNHWSSLSGNLSEIINFAGHVAPAPTERYAGNLLEGFSQTQISTLAVKDNLLVAGGFQGELTCKRLNKKGVSFCTRTTHDDNAISNAVEIYDSLSGATHIIASNNDCGVREYDTERFQPLNNFQFSWPVNHTSISPDRKLMTVVGDNLDGLLVDPQNGKTVATFVGHRDYSFASAWHPDGRTFATGNQDKTCRVWDVRHLSSPTAILKNNLGATRSIRFSSDGQYMVVAEPADFVHVYSTKADYRKRQEIDFFGEISGVSLSPDDECIYIGIWDRTYASLLQYNRKHQYKYLDAY*

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