Glyma18g52030 - SoyBase

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Report for Sequence Feature Glyma18g52030

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60751733
stop:	60758627
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48360	AT	Annotation by Michelle Graham. TAIR10: zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides \| chr1:17868661-17872946 FORWARD LENGTH=891	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
GO:0016818	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	SoyBase	N/A	ISS
KOG2143	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR15749	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR15749:SF6	Panther		JGI		ISS
PF08774	PFAM	VRR-NUC domain	JGI		ISS
PF08797	PFAM	HIRAN domain	JGI		ISS
UniRef100_G7KUQ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Coiled-coil domain-containing protein MTMR15 n=1 Tax=Medicago truncatula RepID=G7KUQ4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F54A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F54A related cluster n=1 Tax=unknown RepID=UPI000233F54A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52030

Paralog	Evidence	Comments
Glyma08g29160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g283900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52030

Limit To All Plant Sequences

>Glyma18g52030.2   sequence type=CDS   gene model=Glyma18g52030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAATGGTACTTACTGGCAGAGAAAGCTTGATTCGATTAATCGGTAAACGGAGACGCTTCCTTCCTAATCGTCACACTATCCTCTCCGATCCTAACCCTAACCCTAACCCTAACCCTAACCCTATCCAGGCTGTTGAAGAGCCACCGCAATCAGATAATAACGACGACGTACAATGCCCTGTTTGCGGCCGCAGCCTTCCCGGGGACAACGACCACATAAACTCTCATCTCGATGCATGTCTCTCTCAACCAAAACCAACAACACCATCAACAAAACGAAAGTTCTCCCAACGCACCCTCCTTCAGCTAAACTTCACCCTATCCAATTCCAAACCCAAATTTCAGAATCTCACTCACGACAGTAACAATTCTCCCGTGCCACTGCCCCAGAACGACGAGTCTGAAAAAGAAGAAGAAGAAGAAGTCCCTGAAAATCATGAGGCCGAATTTGATTCTACAATTGCCGCCACTTCCTTATCTTCCTCGTCCGTGAACAATGATGTGCCTGATGATTCCAAACCCGAGGACGTGCTTGGTGCCACGTTTGAAACATTCATCGTTGGCAGGAAATATGCTGATAATCCAGAAGAAATGTGTGCTGGTGCCGCCATCTCTTTTTTGAGGGACCCTCAAAATGTCAAGGACCCCAATGCCATTAAGGTTGTTTCTGCGGATTCTGTGTGCGGTAAGTCATTAGGTTTTCTCCCCCGTGAGCTAGCACAATACCTATCACCTCTAATTGACAACTATGGCTTTGGATTTCAGGGACATGTTACTTCTGTTCCCAAACATTCTCTTGATATTGTTCCAATTCAGATTATGTGCCGCAGAACATCAGATGGTGAAAGCAAATATGCCAATGAGACCTTTAAATGCTTATGGAAAAATGCTCAACGTGTTGTTGAATTTGCAAGCAGGAATCCTCCTTCATCTGTAAAGTATCAGCTGAATTTTGGTCTTATGCTACATGAAGTGTTAAGAAATAATATTCACCTTCTAACAGAAGATGAAAAAACCTATATGGAATCATTCACTTTACTCTCAAATGATAGTCAGAGGCTTTTTATCCGGCTATACACTAGAAAAGGACCTTGGTTTCGCATGTCTAATATATCATATCCTGAAATAGTGGATACTCAAAAGGCAGTCAAGGGACTTGCTGAGAAAGAATACATACATTCTATTGAAGATGCAAATAAACTATGTGAGAGTGATCTGAATGATATCTTGAATATCCTCAGCGTCTGTGAGTTGCGTGAAATTTGGTGCATTTTGCTTAAAAAGAGTGGCGTTCATGGGATGAAGAAGCAGCATCTGATTTCATCTATTCTTTCTACAGATAATAGTGTACCATGGCCACAACTATCAACTATGATTTTGGATAGAACTGGTTCGTGTATTAGGATTTCTTCAAAAGCTGAATCTCTTATGTGGCGCACTGAGAGACTTTTCTTCTTAAATGGAGAACAGGATCTCTCGTCCTTTCTACTTGTTGATATGGGAAAAATAAAGTATCCAGCTTACAACTGCATAATATCAGAACCAATTTTCTCAAATCGCAATAATCTGCTCTCATACGAAGAGGCCATTGAAGTTGCACAAATTACGGATGAAGCTCTTGATGCAAACAAAATTGACGTGGTATTAAGGTGCATAAATATAGCTGAATCCTGTGTATCTACTGATTTTCCCATCCAGTGCTCAACTTCTGAATCAGTATCTTCAATTCGTCATGTATTTACATCATCATGGGTATACTCCAAAGTGGTCACAGTAGGGATTTCCTTCCTTGAGCGGGAGCACAGGTACATTGATGCTATTAACTTACTCCAATGGTTGCTAAATGTTTTCACTTGCGATGTAAGAAGAGGATATTGGACACTGAGGTTATCAGTTGACTTGGAGCACCTTGGCTACATTGATGAGAGCCTTCAAGTAGCTGAAAATGGGTTGCTGGATCCATGGATACGTGCTGGTTCAAGAATGGCACTGCAAAGGCGGGTTCTTCGCCTAGGGAAACCACCAAGGCGCTGGAAAGTTCCTAGTTTTTCTAGGTCTGCGTTGCGGAAGATCCCTGAGGTTTTTGTTCAAGGGAGACCATTGAATTCTGAATTGGGAGAAAAGAATAGGTACTACAATGAAGCGGGGAAACAATGTGGAGTGGAAGAGATTGCTTTGCATTACTATGCCGGGGATGGAGGTGGATGGCAAGGTGTCCATGCAGAGAGTGGCATATGGTTAACCATTTTTGGGCTTCTTATGTGGGATGTCATATATGCTGATGTGCCAAATGTCTTCTATACTAGATTTCAGAATGCTCCTTTAGATTTCGGCACTGATGACTTTTATACTGCAAGAAAGAGTAGCATAGAATCCCATCTGCAGCAAATTCGTGATGGCATGGCTGAGGAGTTTCTTATTAAGTCATGGGAAACACATATCGGAACAGCATGTAGAGGAGTTAATTGGGGCTGCCATTCTTTAGATGAGCTTCGCGCTGTTGTTTCTTGTGTTGGGGGCACTTGCTTGGCATCTCTCTGCAAACTTCTGGCTCAAGACTATCGGAGCTGGTCTAGTGGAATGCCGGATTTGCTGCTATGGCGTTTCCATGGAGAATACAGTGGTGAAGCCAAGCTTGTTGAAGTGAAAGGCCCCAGGGACCGACTCTCTGAGCAGCAGAGAGCATGGCTATTGCTGCTTTTGGATTATGGATTTACGATTGAGGTTTGTAAAGTGAAACCTTTGTAG

Predicted protein sequences of Glyma18g52030

Limit To All Plant Sequences

>Glyma18g52030.2   sequence type=predicted peptide   gene model=Glyma18g52030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRMVLTGRESLIRLIGKRRRFLPNRHTILSDPNPNPNPNPNPIQAVEEPPQSDNNDDVQCPVCGRSLPGDNDHINSHLDACLSQPKPTTPSTKRKFSQRTLLQLNFTLSNSKPKFQNLTHDSNNSPVPLPQNDESEKEEEEEVPENHEAEFDSTIAATSLSSSSVNNDVPDDSKPEDVLGATFETFIVGRKYADNPEEMCAGAAISFLRDPQNVKDPNAIKVVSADSVCGKSLGFLPRELAQYLSPLIDNYGFGFQGHVTSVPKHSLDIVPIQIMCRRTSDGESKYANETFKCLWKNAQRVVEFASRNPPSSVKYQLNFGLMLHEVLRNNIHLLTEDEKTYMESFTLLSNDSQRLFIRLYTRKGPWFRMSNISYPEIVDTQKAVKGLAEKEYIHSIEDANKLCESDLNDILNILSVCELREIWCILLKKSGVHGMKKQHLISSILSTDNSVPWPQLSTMILDRTGSCIRISSKAESLMWRTERLFFLNGEQDLSSFLLVDMGKIKYPAYNCIISEPIFSNRNNLLSYEEAIEVAQITDEALDANKIDVVLRCINIAESCVSTDFPIQCSTSESVSSIRHVFTSSWVYSKVVTVGISFLEREHRYIDAINLLQWLLNVFTCDVRRGYWTLRLSVDLEHLGYIDESLQVAENGLLDPWIRAGSRMALQRRVLRLGKPPRRWKVPSFSRSALRKIPEVFVQGRPLNSELGEKNRYYNEAGKQCGVEEIALHYYAGDGGGWQGVHAESGIWLTIFGLLMWDVIYADVPNVFYTRFQNAPLDFGTDDFYTARKSSIESHLQQIRDGMAEEFLIKSWETHIGTACRGVNWGCHSLDELRAVVSCVGGTCLASLCKLLAQDYRSWSSGMPDLLLWRFHGEYSGEAKLVEVKGPRDRLSEQQRAWLLLLLDYGFTIEVCKVKPL*

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