Glyma18g52020 - SoyBase

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Report for Sequence Feature Glyma18g52020

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60742949
stop:	60749949
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G24265	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1664) \| chr1:8600613-8603630 FORWARD LENGTH=348	SoyBase	E_val: 1.00E-84	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07889	PFAM	Protein of unknown function (DUF1664)	JGI		ISS
UniRef100_Q0GPH8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP56 n=1 Tax=Glycine max RepID=Q0GPH8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EFBE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EFBE related cluster n=1 Tax=unknown RepID=UPI000233EFBE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52020

Paralog	Evidence	Comments
Glyma08g29150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g283800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g52020

Limit To All Plant Sequences

>Glyma18g52020.2   sequence type=transcript   gene model=Glyma18g52020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTGTTGTTTGTTGCACAACTAGAAAGGGAATATACTATTAATATACTAGTATTTTTATTTATTTTCACAGCTTCAAAACTAGGGTCGTCCACTGAGGAAACAAAGGAGCAGGGAGCACCGCAATCGCAAGGGTTTGTTCGATTTCATTGTCTTCTTTGTCTCGCTGGTCAATTCTCACCAGTGCCCAAACATAAACAATCTCAACGCACAATCGCACATAGCCTAATCCTAAACGCATCGTTTCGCGCTAAATGCTTCGCAACAGAGTGCGCTAGCTTGTTTGCTCAGACTCACTGGCGCCATGGCTCTTTCACTCGGCAAGCTCTTCATTCTCGTCGGCGCAGGTATAGCTGGTTCAGTAATTGCAAAAGAAGGGCGTCTGCCAGATGTCTCTGGTCTCGCCTCTGGTGCTTTTAAGGTTGTTTTGAGGCAACTTAAAAGCGATGATCCTGCTCCAACTGTTAAAAAGCAGCCGCATAATGATGCTTTGTTGGCTCAGGTTAACAGTCTTCGGCAGGAACTACAACTTCTTGCTAGAGATAGATCAATCACTATTGTAAATGCAAGTGGAACAGGTGGGAGAAAATATGCAACAGTGATTGTTATTGTTGTGGTAGGATATGGATACGTTTGGTGGAAGGGATGGAAGCTTCCTGATCTGATGTTTGCAACAAGGCGTGGTTTGTCTGATGCTTGCACATCAATTGGTAATCAGATGGGAAAGCTTTATGAATCAATTGGGGATACCAAGAAGAAATTATCTGCAAGAATCAACGGTCTGGATAAAAATTTAGAAGAATGTGCTGCCATTACTGAAAGTACCAGGGAGGATATATATGTAATTCAACGGAAAGCAGATACAATAAGTGAAGATTCGAAGTCTTTTCATGTTGCAGTCCATGTTCTGGAATCTAAAATTAAAGAAATAGAAGAGAAGCAGGTGGCCACAATTGAAGGAGTGAACATGTTGTGTCAATTTACCAAGACTTTGGAGAATAGCAGATCCACAGAGTATATTCAGGCATCTTCTTCCAGTTCTTCCAGGCCAGCCCTTGAGCTTCCACCAGTTTCACCCTCTTCCAGGGGTTCACAGTCAGGTTCCGCTAGGCTATCTCTTGAGCCACCATCAGTTACGCCATCATCAAGGGAACCTAAAGTAGACAAAAGCAATGGATCTAGTTCTGGCTTGTTTGGGTTGATATCTGGCGTCTATGGTCCATTGCTGACAAGAACTCGCAGTGCGACAGATGCAGTAGTCCAAAAAACTCGTTCGACTAGTTAACAGTAGCATGTCTCTTTTTCCTTTTTTGGACCGCAGTAAACTATATATAGATTATTGGACCTATGGTGGGGTTGAAAATCTTCACCAGTTGGTGACTGTTCAGAAGAATTATGAACCGTTAATTATAGTATGCCCGAGCCAAATTATAAACGACTGGGCATTAAATTTTGCAGCAGAGAGGCTGTTTCTCTCGAGTTTCATTAGGATTAAAATTAAAATAAGAATTTGTCCGATATTCAACTGGGAAAGCTGGTAAAGGAAAGAGTCACTATTGAATTGTTCTAAACCCTTTTGTTCACCGTATTATTTTTGAATTTTGAGAATTAGATGTAAAATCTTGTTAAGCATAGTCCTTAGTTTTTTTTTTTTTATTAATTAACT

Coding sequences of Glyma18g52020

Limit To All Plant Sequences

>Glyma18g52020.1   sequence type=CDS   gene model=Glyma18g52020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTTCACTCGGCAAGCTCTTCATTCTCGTCGGCGCAGGTATAGCTGGTTCAGTAATTGCAAAAGAAGGGCGTCTGCCAGATGTCTCTGGTCTCGCCTCTGGTGCTTTTAAGGTTGTTTTGAGGCAACTTAAAAGCGATGATCCTGCTCCAACTGTTAAAAAGCAGCCGCATAATGATGCTTTGTTGGCTCAGGTTAACAGTCTTCGGCAGGAACTACAACTTCTTGCTAGAGATAGATCAATCACTATTGTAAATGCAAGTGGAACAGGTGGGAGAAAATATGCAACAGTGATTGTTATTGTTGTGGTAGGATATGGATACGTTTGGTGGAAGGGATGGAAGCTTCCTGATCTGATGTTTGCAACAAGGCGTGGTTTGTCTGATGCTTGCACATCAATTGGTAATCAGATGGGAAAGCTTTATGAATCAATTGGGGATACCAAGAAGAAATTATCTGCAAGAATCAACGGTCTGGATAAAAATTTAGAAGAATGTGCTGCCATTACTGAAAGTACCAGGGAGGATATATATGTAATTCAACGGAAAGCAGATACAATAAGTGAAGATTCGAAGTCTTTTCATGTTGCAGTCCATGTTCTGGAATCTAAAATTAAAGAAATAGAAGAGAAGCAGGTGGCCACAATTGAAGGAGTGAACATGTTGTGTCAATTTACCAAGACTTTGGAGAATAGCAGATCCACAGAGTATATTCAGGCATCTTCTTCCAGTTCTTCCAGGCCAGCCCTTGAGCTTCCACCAGTTTCACCCTCTTCCAGGGGTTCACAGTCAGGTTCCGCTAGGCTATCTCTTGAGCCACCATCAGTTACGCCATCATCAAGGACTGCATCCTTGCCACCGACATTGTCTACGGATCCACCATCTCCATCAATTTCTGGTGGATCTTTCCAGGAACCTAAAGTAGACAAAAGCAATGGATCTAGTTCTGGCTTGTTTGGGTTGATATCTGGCGTCTATGGTCCATTGCTGACAAGAACTCGCAGTGCGACAGATGCAGTAGTCCAAAAAACTCGTTCGACTAGTTAA

>Glyma18g52020.2   sequence type=CDS   gene model=Glyma18g52020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTTCACTCGGCAAGCTCTTCATTCTCGTCGGCGCAGGTATAGCTGGTTCAGTAATTGCAAAAGAAGGGCGTCTGCCAGATGTCTCTGGTCTCGCCTCTGGTGCTTTTAAGGTTGTTTTGAGGCAACTTAAAAGCGATGATCCTGCTCCAACTGTTAAAAAGCAGCCGCATAATGATGCTTTGTTGGCTCAGGTTAACAGTCTTCGGCAGGAACTACAACTTCTTGCTAGAGATAGATCAATCACTATTGTAAATGCAAGTGGAACAGGTGGGAGAAAATATGCAACAGTGATTGTTATTGTTGTGGTAGGATATGGATACGTTTGGTGGAAGGGATGGAAGCTTCCTGATCTGATGTTTGCAACAAGGCGTGGTTTGTCTGATGCTTGCACATCAATTGGTAATCAGATGGGAAAGCTTTATGAATCAATTGGGGATACCAAGAAGAAATTATCTGCAAGAATCAACGGTCTGGATAAAAATTTAGAAGAATGTGCTGCCATTACTGAAAGTACCAGGGAGGATATATATGTAATTCAACGGAAAGCAGATACAATAAGTGAAGATTCGAAGTCTTTTCATGTTGCAGTCCATGTTCTGGAATCTAAAATTAAAGAAATAGAAGAGAAGCAGGTGGCCACAATTGAAGGAGTGAACATGTTGTGTCAATTTACCAAGACTTTGGAGAATAGCAGATCCACAGAGTATATTCAGGCATCTTCTTCCAGTTCTTCCAGGCCAGCCCTTGAGCTTCCACCAGTTTCACCCTCTTCCAGGGGTTCACAGTCAGGTTCCGCTAGGCTATCTCTTGAGCCACCATCAGTTACGCCATCATCAAGGGAACCTAAAGTAGACAAAAGCAATGGATCTAGTTCTGGCTTGTTTGGGTTGATATCTGGCGTCTATGGTCCATTGCTGACAAGAACTCGCAGTGCGACAGATGCAGTAGTCCAAAAAACTCGTTCGACTAGTTAA

Predicted protein sequences of Glyma18g52020

Limit To All Plant Sequences

>Glyma18g52020.1   sequence type=predicted peptide   gene model=Glyma18g52020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSLGKLFILVGAGIAGSVIAKEGRLPDVSGLASGAFKVVLRQLKSDDPAPTVKKQPHNDALLAQVNSLRQELQLLARDRSITIVNASGTGGRKYATVIVIVVVGYGYVWWKGWKLPDLMFATRRGLSDACTSIGNQMGKLYESIGDTKKKLSARINGLDKNLEECAAITESTREDIYVIQRKADTISEDSKSFHVAVHVLESKIKEIEEKQVATIEGVNMLCQFTKTLENSRSTEYIQASSSSSSRPALELPPVSPSSRGSQSGSARLSLEPPSVTPSSRTASLPPTLSTDPPSPSISGGSFQEPKVDKSNGSSSGLFGLISGVYGPLLTRTRSATDAVVQKTRSTS*

>Glyma18g52020.2   sequence type=predicted peptide   gene model=Glyma18g52020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSLGKLFILVGAGIAGSVIAKEGRLPDVSGLASGAFKVVLRQLKSDDPAPTVKKQPHNDALLAQVNSLRQELQLLARDRSITIVNASGTGGRKYATVIVIVVVGYGYVWWKGWKLPDLMFATRRGLSDACTSIGNQMGKLYESIGDTKKKLSARINGLDKNLEECAAITESTREDIYVIQRKADTISEDSKSFHVAVHVLESKIKEIEEKQVATIEGVNMLCQFTKTLENSRSTEYIQASSSSSSRPALELPPVSPSSRGSQSGSARLSLEPPSVTPSSREPKVDKSNGSSSGLFGLISGVYGPLLTRTRSATDAVVQKTRSTS*

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