SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G13990 | AT | Annotation by Michelle Graham. TAIR10: Exostosin family protein | chr4:8084395-8085960 FORWARD LENGTH=521 | SoyBase | E_val: 3.00E-164 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| KOG1021 | KOG | Acetylglucosaminyltransferase EXT1/exostosin 1 | JGI | ISS | |
| PTHR11062 | Panther | EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED | JGI | ISS | |
| PF03016 | PFAM | Exostosin family | JGI | ISS | |
| UniRef100_G7JZG4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Xyloglucan galactosyltransferase KATAMARI1 n=1 Tax=Medicago truncatula RepID=G7JZG4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F548 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F548 related cluster n=1 Tax=unknown RepID=UPI000233F548 | SoyBase | E_val: 0 | ISS |
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Glyma18g52000 not represented in the dataset |
Glyma18g52000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g283600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g52000.2 sequence type=CDS gene model=Glyma18g52000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGATGCAAAACAAGCACACATGCCTAAACCCTCAAATTCTTCTTTCAATCTTAATGACACTGCCGATTGTCCTAGAAAATCTAATCATACCAATCAAAATGGTGTAACAAGTGGTGCCTCCAATATACCAAGGCGCATTGTAGAGAATCACACAGAGACCATAGTTCCTGCAGCACATGGTGAAGTGGATAAGAGAGTCCACATGAATTCCCCTCCTTTGGATAGAGACAATGTTGGAGTTGTTACAAATGTTCCCACAAGAAATTTGGATTCTTGTTCTGGTCAATATATCTATGTTTATGATCTTGCTAGCAGGTTCAATGAAGATTTGCTGAAAGGGTGTCACTCTCTCAGGAAGTCGATAGATATGTGTCTTTACATGTCTAACTTAGGCCTTGGACCTAAGGTTATTGAGAAATCAAAGGAGAAGGTTTTGTTGAAGGAAAGCTGGTATGCAACCAACCAATTTTCACTTGAAGTTATTTTCCATAACACACTGAAGAACTACAAGTGCTTAACCAATGATTCCTCACAGGCTTCTGCTATATATGTACCCTACTATGCTGGCCTTGATGTGGGTCAGTACCTCTGGGGAGGCTTCAATGTTTCAATCAGAGATGCTTCACCAAAAGAACTAGTGAAATGGCTGGCACGACAACCCGAGTGGAAAAGAATGTGGGGTAGGGATCATTTCATGGTTGTAGGGAGAATTGGTTGGGACTTCAGGAGAAGAACAGAAAATAATAATGACTGGGGCACCAAGCTAATGCTTTTGCCAGAAGCAAGAAACATGTCAATTTTGCTAATTGAATCTGGTTCAAAGGACAATGAGTTTCCAATCCCATATCCAACTTACTTTCACCCCTCCAAGGATAAAGAGTTTTTTCAGTGGCAGAAAAAAATGATAAAAGTTTCAAGGCCTTACTTGTTTTCATTTGCAGGTGCTTCAAGGCATTCATCATCCTCCATCAGAAATGAAATAATCAAACAATGTCAATCCTCTAGGAGCTGCAAACTTCTAAGTTGCAATGATGGTCATAATTATTGCAATGATCCTGTGCATGTTACAAAGGTGTTTCAGAGCTCAGTTTTCTGTTTACAGCCTCCAGGGGATTCATTCACTAGGAGATCAACTTTTGACTCAATTTTGGCAGGTTGCATTCCCGTTTTCTTTCATCCAGAATCAGCATATAACCAATATTTGTGGCATTTGCCCAGAAATGGTTCTAGCTACTCTGTGTACATACCAGAAAGAGATGTCAGAGAGAAGAGAGTAATGATCAATGAGAAGTTGTCTAAGGTTCCAAAAAGTGAAGTGTTGGAAATGAGAAAGGAGATAATAAGTCTTATTCCAAGAATAATATATCGTTATCCAAGTTCTAGATCAGTGACCGTTGAAGATGCATTTGGTATAGCAGTTAAGGGAATTCTTGGGAGAATAGAAGCAGTAAGAAGGAACATTACAAATGTCAATTATACCATTTCCTAA
>Glyma18g52000.2 sequence type=predicted peptide gene model=Glyma18g52000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNDAKQAHMPKPSNSSFNLNDTADCPRKSNHTNQNGVTSGASNIPRRIVENHTETIVPAAHGEVDKRVHMNSPPLDRDNVGVVTNVPTRNLDSCSGQYIYVYDLASRFNEDLLKGCHSLRKSIDMCLYMSNLGLGPKVIEKSKEKVLLKESWYATNQFSLEVIFHNTLKNYKCLTNDSSQASAIYVPYYAGLDVGQYLWGGFNVSIRDASPKELVKWLARQPEWKRMWGRDHFMVVGRIGWDFRRRTENNNDWGTKLMLLPEARNMSILLIESGSKDNEFPIPYPTYFHPSKDKEFFQWQKKMIKVSRPYLFSFAGASRHSSSSIRNEIIKQCQSSRSCKLLSCNDGHNYCNDPVHVTKVFQSSVFCLQPPGDSFTRRSTFDSILAGCIPVFFHPESAYNQYLWHLPRNGSSYSVYIPERDVREKRVMINEKLSKVPKSEVLEMRKEIISLIPRIIYRYPSSRSVTVEDAFGIAVKGILGRIEAVRRNITNVNYTIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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