Glyma18g51990 - SoyBase

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Report for Sequence Feature Glyma18g51990

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60725655
stop:	60728111
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16490	AT	Annotation by Michelle Graham. TAIR10: ROP-interactive CRIB motif-containing protein 4 \| chr5:5384468-5385205 REVERSE LENGTH=153	SoyBase	E_val: 9.00E-23	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010215	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose microfibril organization	SoyBase	N/A	ISS
GO:0017157	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of exocytosis	SoyBase	N/A	ISS
GO:0030833	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of actin filament polymerization	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0051650	GO-bp	Annotation by Michelle Graham. GO Biological Process: establishment of vesicle localization	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016324	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF00786	PFAM	P21-Rho-binding domain	JGI		ISS
UniRef100_A2Q576	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Wiscott-Aldrich syndrome, C-terminal n=1 Tax=Medicago truncatula RepID=A2Q576_MEDTR	SoyBase	E_val: 3.00E-63	ISS
UniRef100_UPI000233EFBD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EFBD related cluster n=1 Tax=unknown RepID=UPI000233EFBD	SoyBase	E_val: 4.00E-124	ISS

Expression Patterns of Glyma18g51990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g51990 not represented in the dataset	Glyma18g51990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51990

Paralog	Evidence	Comments
Glyma08g29100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g283500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g51990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g51990

Limit To All Plant Sequences

>Glyma18g51990.2   sequence type=transcript   gene model=Glyma18g51990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTTGAGTTGCACAGTTTAACCAACTAACCACTCTATTACTCTAACACACCCACTCCATTATCATTTATATATACACATACCAAACTTGGATTGAAAATAGTTTCCTTTCCGCACGTAAATCATTCTAACTTGCTCATAAAGACAAACAGGAACCTAAATATAACCCCATTATAGGTACCCTTTTTTGATAGATAGATAGCTATATAGACTAATAAGCTCTTGAATATTAGAACTTGCTATAGCTATACACACATAAAATTTGGGGTTAGGGAGAGATGAGAAACCGTATTGAAAGATTAGTAGTTCCATGGTCTTTCAGCTGTGCTTCCCATTCAAGTGTGAAATTAGGTGCACCCAAAGGACCAAAAGAAGATTCAAAAGGAACTATTGTTTCAAACAAGAAGGACAAGATAGATCATTCATCAGGACCCAAATGAAGAGAGGCAAGCCTTCTGGGTTTCTGGTTCTACCAAAGCCTAATGTAGCTACTGGCATACAGAGAATAATCAAGGGCATCAAGAATTTATCTCAATTATTTGTTTACAAAAAAGAGGATGTCGAAAAAATGGAACCTGAGATGGAAATTGGGTATCCAACAGATGTGAAGCATGTGACACATATTGGAATTGATGGGTCAACAACCATTACAAATAATGTCAAGGGTTGGGACAATCTGAAGGCACCTGAATTATTGTCTCTGTCTCCAATTTCATTCAAGCAATTTGAATTGGCCATGGCTAGCCAAGCTCAATATCCTCTCATTAACGATCTTAATTCCTCAAAACGTGGTTAGAACACCTTATGGGAATGCTGGCACTTCCAAGTCCCTTCTTCTAATTGTAGATTAATGATGATTGATGACGATGTATTTAGGAGTTCATATACAAGTGCATAAATTGAAAATTCGTGAATGTTTGTAATCTCTTTCACTCTTTGTTTTGCTCGGTTCTTGAGATTGCCTAAGCTTCATTACTTCAAGTCTTCCATTTTAAAATTGAGTTTTTCTGTCTATAATATTTTATCAATTAAAAGAAAGAAAAAAGCTTAGTAG

Coding sequences of Glyma18g51990

Limit To All Plant Sequences

>Glyma18g51990.1   sequence type=CDS   gene model=Glyma18g51990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAACCGTATTGAAAGATTAGTAGTTCCATGGTCTTTCAGCTGTGCTTCCCATTCAAGTGTGAAATTAGGTGCACCCAAAGGACCAAAAGAAGATTCAAAAGGAACTATTGTTTCAAGAAGACAAGAAGGACAAGATAGATCATTCATCAGGACCCAAATGAAGAGAGGCAAGCCTTCTGGGTTTCTGGTTCTACCAAAGCCTAATGTAGCTACTGGCATACAGAGAATAATCAAGGGCATCAAGAATTTATCTCAATTATTTGTTTACAAAAAAGAGGATGTCGAAAAAATGGAACCTGAGATGGAAATTGGGTATCCAACAGATGTGAAGCATGTGACACATATTGGAATTGATGGGTCAACAACCATTACAAATAATGTCAAGGGTTGGGACAATCTGAAGGCACCTGAATTATTGTCTCTGTCTCCAATTTCATTCAAGCAATTTGAATTGGCCATGGCTAGCCAAGCTCAATATCCTCTCATTAACGATCTTAATTCCTCAAAACGTGGTTAG

>Glyma18g51990.2   sequence type=CDS   gene model=Glyma18g51990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCTTTCAGCTGTGCTTCCCATTCAAGTGTGAAATTAGGTGCACCCAAAGGACCAAAAGAAGATTCAAAAGGAACTATTGTTTCAAACAAGAAGGACAAGATAGATCATTCATCAGGACCCAAATGAAGAGAGGCAAGCCTTCTGGGTTTCTGGTTCTACCAAAGCCTAATGTAGCTACTGGCATACAGAGAATAATCAAGGGCATCAAGAATTTATCTCAATTATTTGTTTACAAAAAAGAGGATGTCGAAAAAATGGAACCTGAGATGGAAATTGGGTATCCAACAGATGTGAAGCATGTGACACATATTGGAATTGATGGGTCAACAACCATTACAAATAATGTCAAGGGTTGGGACAATCTGAAGGCACCTGAATTATTGTCTCTGTCTCCAATTTCATTCAAGCAATTTGAATTGGCCATGGCTAGCCAAGCTCAATATCCTCTCATTAACGATCTTAATTCCTCAAAACGTGGTTAG

Predicted protein sequences of Glyma18g51990

Limit To All Plant Sequences

>Glyma18g51990.1   sequence type=predicted peptide   gene model=Glyma18g51990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRNRIERLVVPWSFSCASHSSVKLGAPKGPKEDSKGTIVSRRQEGQDRSFIRTQMKRGKPSGFLVLPKPNVATGIQRIIKGIKNLSQLFVYKKEDVEKMEPEMEIGYPTDVKHVTHIGIDGSTTITNNVKGWDNLKAPELLSLSPISFKQFELAMASQAQYPLINDLNSSKRG*

>Glyma18g51990.2   sequence type=predicted peptide   gene model=Glyma18g51990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFQLCFPFKCEIRCTQRTKRRFKRNYCFKQEGQDRSFIRTQMKRGKPSGFLVLPKPNVATGIQRIIKGIKNLSQLFVYKKEDVEKMEPEMEIGYPTDVKHVTHIGIDGSTTITNNVKGWDNLKAPELLSLSPISFKQFELAMASQAQYPLINDLNSSKRG*

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