Glyma18g51970 - SoyBase

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Report for Sequence Feature Glyma18g51970

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60708698
stop:	60714044
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02750	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr3:593601-595457 REVERSE LENGTH=492	SoyBase	E_val: 7.00E-152	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0010193	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ozone	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF94	Panther	PROTEIN PHOSPHATASE 2C DELTA	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_G7KTS4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c n=1 Tax=Medicago truncatula RepID=G7KTS4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EFBB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EFBB related cluster n=1 Tax=unknown RepID=UPI000233EFBB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g51970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51970

Paralog	Evidence	Comments
Glyma08g29060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g283300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g51970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g51970

Limit To All Plant Sequences

>Glyma18g51970.1   sequence type=CDS   gene model=Glyma18g51970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCAGGCGGTGGAGGTGCTGAATCGGTATGGGACGGATCTGGTGGGGGAGCCGAGAGGTTCTGATTCTGAGTGTTTGGCGGGTTTTGAGTGTTTTCTGAACATTGTGAGGGCATTGGGAATGGGATCGTGCATCTCGGAGGTTGGAGCTGGTGGAAGTTCCCCTCCTCTTCTTCCTTTTTCGCCTGAATCGAACATGGATGGTGGGAAGAGGAGAAGGTTAAGGGGTTCCTCTTCCTTTGATTTCAAAGTGCCTGGGAGGATGTTCTTGAATGGGTCAAGCGAGGTTGCATCCATGTATTGCAAGCAAGGAAGAAAAGGGATCAACCAAGATGCTATGCTTGTTTGGGAGAACTTTTGTTCAAAGGAAGACACCATTTTTTGTGGTGTTTTTGATGGTCATGGACCTTATGGCCACAGGGTTGCAAAGAAAGTTAGGGATTCTTTTCCTTTAAAGCTTAATGCCCAATGGGATTTGCATCATAAGAATAGAGATGGACTCAGTGATCATAGCAGCGCCACAGGAAGTTATAAATCTGAAGGGAATGGATTTAGACTGGTGGATGAGAAAACTAGTCCCACTGATCATGAACTTGATGAAACAGATACGATTTTGACATTACGAGAATCGTTTTTGAAGGCTTGTAAGATTATGGATAAAGAACTGAAACATCATCCTGATATTGACTGCTTTTGTAGTGGGACTACAGCAGTTACTTTGGTCAAGCAGGGGCTGAACCTTGTTATTGGAAATGTTGGTGACTCGAGAGCTGTATTGGGTACCCGAGATCATGAGGATTCCCTTATTGCTGTTCAGTTGACCGTTGACCTTAAGCCAAATCTTCCAAGGGAAGAAGAGAGGATCAAGCTTCGTAGAGGAAGGGTTTTTTCCCTTCAGAATGAACCTGATGTGGCTCGAGTTTGGCTGCCTAACTCTGATTTCCCTGGTCTTGCTATGGCTCGGGCATTTGGAGATTTTTGCCTTAAGGACTTTGGATTGATTGCTGTTCCAGATATCTCATATCACCGCCTTACCGAGAAGGATGAATTTGTTGTGTTAGCAACAGATGGGATTTGGGATGTTCTGTCAAATGAAGAAGTTGTGGACATTGTGGCATCTGCTTCACAGTCTACTGCTGCTAGAGCACTGGTTGAGTCAGCTGTTCGGGCATGGAAGACAAAATTTCCTTTTTGTAAGGTTGATGATTGTGCCGCAGTTTGCCTCTTCTTTGATTCTGATTTAGATTTCAAGTCAACAGATACAAAAGACAAGTTAATACCGGAGGCATCTATTGACCAATCTGAGCAGTTAGCTTTACTTGGTGAAAAGGGAGTTGGAAATGAAGCTGAAAAAAAGCAGCAATAG

Predicted protein sequences of Glyma18g51970

Limit To All Plant Sequences

>Glyma18g51970.1   sequence type=predicted peptide   gene model=Glyma18g51970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQAVEVLNRYGTDLVGEPRGSDSECLAGFECFLNIVRALGMGSCISEVGAGGSSPPLLPFSPESNMDGGKRRRLRGSSSFDFKVPGRMFLNGSSEVASMYCKQGRKGINQDAMLVWENFCSKEDTIFCGVFDGHGPYGHRVAKKVRDSFPLKLNAQWDLHHKNRDGLSDHSSATGSYKSEGNGFRLVDEKTSPTDHELDETDTILTLRESFLKACKIMDKELKHHPDIDCFCSGTTAVTLVKQGLNLVIGNVGDSRAVLGTRDHEDSLIAVQLTVDLKPNLPREEERIKLRRGRVFSLQNEPDVARVWLPNSDFPGLAMARAFGDFCLKDFGLIAVPDISYHRLTEKDEFVVLATDGIWDVLSNEEVVDIVASASQSTAARALVESAVRAWKTKFPFCKVDDCAAVCLFFDSDLDFKSTDTKDKLIPEASIDQSEQLALLGEKGVGNEAEKKQQ*

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