SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G46530 | AT | Annotation by Michelle Graham. TAIR10: NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835 | SoyBase | E_val: 2.00E-67 | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0009626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0009814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0043531 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ADP binding | SoyBase | N/A | ISS |
| PTHR23155 | Panther | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | JGI | ISS | |
| PTHR23155:SF121 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00931 | PFAM | NB-ARC domain | JGI | ISS | |
| UniRef100_B9T9U3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance protein RPH8A, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9T9U3_RICCO | SoyBase | E_val: 5.00E-83 | ISS |
| UniRef100_I1N4Z4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4Z4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g51960 not represented in the dataset |
Glyma18g51960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
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| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g51960.1 sequence type=CDS gene model=Glyma18g51960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAGATAGTGTTGTTGCTTTTGTGCTAGATAACTTGTCGCTGCTTGAAGATGAGCACAAGTTGCTTTCTGGCGTGGAGGACAAAGTCAACTCTCTTTGCAATGAGCTCAAGTTTATACACATCTTCCTCAAGAATTCCGAGGGCAAGCGCAGTCATGACACAGGGAAAGAAGTGGTGAGCCAAATCAGAGATGTCGCCCACAAAGCTGAAAATGTTGTTGACACCTACGTTGCCAACATCGCTCAACAAAAACAGAGAAGCAAACTGAGCAAGTTATTCCACCTCAAAGAACATGTCATGGTGCTTCACCAAGTCAACTCTGAGATAGAGAAGATCAGGAGTCAGATCGAAGAGATCTATAAGAACGGGGACAGATATGGCATTGGAGAAGGTGAATTCCGAAGCGAAGAAGCTGCTGCAGAAGCAGAATCACTCCTCAAAAGAAGGAGGGAGGTGGAGGAAGAAGATATAGTGGGCTTAGTGCATGACTCAAGCCATGTAATTCATGAACTCATGGAAAGTGAGTCACGTCTTAAAGTTGTGTCCATAATTGGAATGGGAGGGTTGGGTAAGACCACTCTTGCCCGTAAGATCTATAACAACAATCAAGTGCAGCTGCGGTTTCCTTGCCTTGCATGGGTTTCTGTGTCCAATGATTACAGACCCAAGGAATGTCTTCTCAGCCTTCTCAAATGTTCAATGTCTTCCACATCTGAATTTGAAAAATTAAGTGAGGAAGATCTGAAGAAGAAGGTAGCAGAATGGTTGAAAGGGAAGAGTTATCTGGTAGTGCTTGATGACATCTGGGAAACCAAAGTATGGGATGAGGTTAAAGGAGCCTTTCCAGATGACCAAATAGGTAGTAGAATTCTCATAACAAGTCGCAACAAAGAGGTGGCACACTATGCTGGAACTGCGTCTCCCTACGACCTTCCCATCCTCAATGAAGATGAAAGCTGGGAACTCTTCACAAAGAAGATTTTTCGAGGTGAAGAATGCCCGTCTGATTTAGAGCCTCTGGGTAGATCCATTGTGAAAACTTGTGGGGGTTTACCACTTGCCATTGTTGGTTTAGCAGGACTTGTTGCCAAGAAGGAGAAGTCACAAAGAGAGTGGTCAAGAATCAAGGAAGTGAGTTGGCGTCTTACACAGGATAAGAATGGAGTAATGGATATGCTGAACCTTAGGTATGACAACTTGCCTGAAAGATTAATGCCTTGCTTTTTGTATTTTGGAATCTGTCCACGAGACTATGTGGAAAGCTATGAGGAGAGGAAAGCGAAAGAATTAGAGACTGTTGAAGTTTTCATCCACTAA
>Glyma18g51960.1 sequence type=predicted peptide gene model=Glyma18g51960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTDSVVAFVLDNLSLLEDEHKLLSGVEDKVNSLCNELKFIHIFLKNSEGKRSHDTGKEVVSQIRDVAHKAENVVDTYVANIAQQKQRSKLSKLFHLKEHVMVLHQVNSEIEKIRSQIEEIYKNGDRYGIGEGEFRSEEAAAEAESLLKRRREVEEEDIVGLVHDSSHVIHELMESESRLKVVSIIGMGGLGKTTLARKIYNNNQVQLRFPCLAWVSVSNDYRPKECLLSLLKCSMSSTSEFEKLSEEDLKKKVAEWLKGKSYLVVLDDIWETKVWDEVKGAFPDDQIGSRILITSRNKEVAHYAGTASPYDLPILNEDESWELFTKKIFRGEECPSDLEPLGRSIVKTCGGLPLAIVGLAGLVAKKEKSQREWSRIKEVSWRLTQDKNGVMDMLNLRYDNLPERLMPCFLYFGICPRDYVESYEERKAKELETVEVFIH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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