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Report for Sequence Feature Glyma18g51871

Feature Type:gene_model
Chromosome:Gm18
Start:60608866
stop:60618348
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g51871
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13250AT Annotation by Michelle Graham. TAIR10: RING finger protein | chr5:4234486-4241615 FORWARD LENGTH=387 SoyBaseE_val: 4.00E-47ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR10825Panther RING FINGER PROTEIN JGI ISS
PTHR10825:SF3Panther RING FINGER PROTEIN JGI ISS
UniRef100_D7U621UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=D7U621_VITVI SoyBaseE_val: 3.00E-68ISS
UniRef100_F4K2H9UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=2 Tax=Arabidopsis thaliana RepID=F4K2H9_ARATH SoyBaseE_val: 2.00E-44ISS

Expression Patterns of Glyma18g51871
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g51871 not represented in the dataset
Glyma18g51871 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51871
ParalogEvidenceComments
Glyma08g28962 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51871 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g282500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g51871
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g51871
>Glyma18g51871.1   sequence type=CDS   gene model=Glyma18g51871   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCATGGTTCCTTCTCAAAACGGGAAACAACAACAAAACATTAATAGGAGTGCTATGAACCAGGTTATTGAAGTTGAAGGAGGCTACAATTGCTTGTTAGGATCCGATTTTGTGGCGAGGAGGCACATCATGGCTGAGGCTGAAGAATCATCGAGACACAATAACAACACTAACGAGGAAGCTGAAGTTGGAGCTTGCGGTTCAATCTCAAAGGAGGAGGAAGAAGAAGAAGATGAAGAAGAAGCAAACAACAACAGCAACAACAACAACAACAGTAACTGGCTTCAATTAAGCATAGGTTTGACAAGCACAAAACAAGAGCGTGATACTCGAACCGTTGTTCCAACAACAACAACAACCAGTTCAGGGCTTGTTGAGTTAGACTTGCTTCCTTTACGGCGGAGCTCGGAGCAGCAGCAGCAGCAGCCGCCGCCACCGGCGGTTTTTCCAGTGATGGCTTCAGGGAGAGGAGGAGGTTCTTCTTCTTCTTTGCTTTTTGAGCAGCATCATCGAACGACGTCGTATTCATCTTCTTCTTCCATGTCGACGATGATGTCTATGGCCAGTGGTCCAATTACATCAACCTTTGGTCACCAAGAGATGATGAACTGGGCATTTGGTCCACTACTTCCTCAATATTCAATGCCTATTATGCCCTCTTCTTCATCTTTCACTCCTCTTCCTATTCCTTCTTCTTCTTCCTCTTCTCAAACTTGTTACTCTTCTTTGAGGCCTCATCCCTTAGGATCTTACTTTCCCACAGTACCCTTTCATCATCACTTCCCTTCTTCTTCCTCTTCTGGGTTTGATCAATATGACGTGGCAGCTGGGCCAGGACCAAGCTCCGATAATAATGTCACCGTTCGAGTTGTTGATCCTCCTAGAAGACCTCATTCTGGAATATGGTTTATGTTACAAGCCTCTCCAAACCAAGCGAGAGAACCATTCTTGCCACAAATACCTAAGAACTACCTTAGAATTAAAGACGGAAGGATGACAGTTCGGTTGCTATTGAAGTATCTGGTTAGCAAACTCAGACTGGAAAGCGAATCGGAGATAGAGATAACATGCAGAGGGCAGCAACTTTTACCTTTCTTGACGTTGCAGCATGTGAGGGATAACATTTGGAGTCCGAGGGACACCACCACAAGACCTTTGCTTTCAGATTCCTCAACCACCACAGATCATGTCATGGTGCTCCATTACGGTAGAACCACAAACTGA
Predicted protein sequences of Glyma18g51871
>Glyma18g51871.1   sequence type=predicted peptide   gene model=Glyma18g51871   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTMVPSQNGKQQQNINRSAMNQVIEVEGGYNCLLGSDFVARRHIMAEAEESSRHNNNTNEEAEVGACGSISKEEEEEEDEEEANNNSNNNNNSNWLQLSIGLTSTKQERDTRTVVPTTTTTSSGLVELDLLPLRRSSEQQQQQPPPPAVFPVMASGRGGGSSSSLLFEQHHRTTSYSSSSSMSTMMSMASGPITSTFGHQEMMNWAFGPLLPQYSMPIMPSSSSFTPLPIPSSSSSSQTCYSSLRPHPLGSYFPTVPFHHHFPSSSSSGFDQYDVAAGPGPSSDNNVTVRVVDPPRRPHSGIWFMLQASPNQAREPFLPQIPKNYLRIKDGRMTVRLLLKYLVSKLRLESESEIEITCRGQQLLPFLTLQHVRDNIWSPRDTTTRPLLSDSSTTTDHVMVLHYGRTTN*






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