Report for Sequence Feature Glyma18g51850
Feature Type: gene_model
Chromosome: Gm18
Start: 60601534
stop: 60603138
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g51850
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G48800 AT
Annotation by Michelle Graham. TAIR10: Sterile alpha motif (SAM) domain-containing protein | chr3:18095825-18096661 REVERSE LENGTH=278
SoyBase E_val: 1.00E-43 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG4374
KOG
RNA-binding protein Bicaudal-C
JGI ISS
PTHR10627 Panther
SCP160
JGI ISS
PF00536 PFAM
SAM domain (Sterile alpha motif)
JGI ISS
UniRef100_G7KSY1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: SAM domain family protein n=1 Tax=Medicago truncatula RepID=G7KSY1_MEDTR
SoyBase E_val: 2.00E-68 ISS
UniRef100_I1KWR9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWR9_SOYBN
SoyBase E_val: 2.00E-164 ISS
Expression Patterns of Glyma18g51850
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g51850
Paralog Evidence Comments
Glyma08g28950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g51850 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g282400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g51850
Coding sequences of Glyma18g51850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g51850.1 sequence type=CDS gene model=Glyma18g51850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCGAAGAGCCCGAAAACAATCCACCGCCACCGGAACCTCCAATCCCCTCCGCACCGGATGCCGCGGAGGAAACTGCAGCTCCGGCTCCGGCAACGACGTCGCAACCAAGTGCCGAGATCGTCGCTCCTCTGGCGCTAGCTCCGAAGCGGCAGCGCCGTCCGAGTGTTCGCCTGGGGGAGATCGGCGACCAACGCGCCTCCTCCGCGCACGGCCACGACTCGCACACGCGCCGCCCGAGCATGCCGCCATGGAGCTGGCGGACTCCGAAGGAATCTTCCAGAACCTCGAAGGCGCGCACCGTAACGAACCTCGCGAACGGCGGCGAAGAGTTCGGAAACAGCAACAGCCGAAGAGGAAAAGCAAAACGAGGACCAGCGACGAAGCGATTGAGAACAAATTGGGCTCCTAGAGCGACAATCGACGAAAATGGTGACGAAGAAGGTTTTAGGGATTTCGAACACGAACACGAACAGAGTCCAGTACACTCGATGGAGGAGAACGGAGTGGATTATTGGCACGTGGATCGGAACGAGGATCCTAGGGTTAGGGTTTCGGAAAACGACGGCGTTGAATCGGAGTCGCAGGAACGGAGGAAGAGCGATGGAGTTCGGTCTTGGCTTTACGAGTTAGGGCTGAGTAGGTATGCGCCTATGTTTGAGATCCATGAGGTCGATGACGAGTTGCTTCCGATGTTGACTTTGGAGGATCTGAAGGACATGGGGATCAATGCTGTTGGTTCAAGAAGGAAAATGTACACTGCAATCCAGAAGCTGAGGAAATGCTTGCCGTGA
Predicted protein sequences of Glyma18g51850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g51850.1 sequence type=predicted peptide gene model=Glyma18g51850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAEEPENNPPPPEPPIPSAPDAAEETAAPAPATTSQPSAEIVAPLALAPKRQRRPSVRLGEIGDQRASSAHGHDSHTRRPSMPPWSWRTPKESSRTSKARTVTNLANGGEEFGNSNSRRGKAKRGPATKRLRTNWAPRATIDENGDEEGFRDFEHEHEQSPVHSMEENGVDYWHVDRNEDPRVRVSENDGVESESQERRKSDGVRSWLYELGLSRYAPMFEIHEVDDELLPMLTLEDLKDMGINAVGSRRKMYTAIQKLRKCLP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
