Glyma18g51790 - SoyBase

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Report for Sequence Feature Glyma18g51790

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60556310
stop:	60560522
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33550	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein \| chr2:14210180-14211487 REVERSE LENGTH=314	SoyBase	E_val: 5.00E-98	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
UniRef100_I1N4Y2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4Y2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XLG9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0039C07.7 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XLG9_ORYSJ	SoyBase	E_val: 3.00E-38	ISS

Expression Patterns of Glyma18g51790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51790

Paralog	Evidence	Comments
Glyma08g28880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g281800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g51790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g51790

Limit To All Plant Sequences

>Glyma18g51790.1   sequence type=CDS   gene model=Glyma18g51790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTGGACCAGCCTTCGAATCCCAACGCCGTCGATGGCGCTGGTAACGGCGCGACGCCCTGCTCCGCCGCAGACGGCGGCGATGACGGGAGGCCGGCGGCGAGGCTGCCGCGGTGGACGCGACAGGAGATTCTGGTGCTGATTCAGGGAAAGAGCGACGCCGAGAGCCGGTTCAGGCCGGGTCGGGGGAGCGGTTCGGCGTTTGGTTCGGGCGAACCGAAATGGGCGTTGGTGTCATCGTACTGCAAGAAGCACGGCGTGAACCGGGAACCGGTTCAGTGCCGGAAGCGGTGGAGCAACCTCGCCGGCGATTACAAAAAGATCAAGGAGTGGGAGTCGCAGGTGAGGGACGAAGCGGAGTCGTTTTGGCTCATGAGGAACGATTTGAGGAGGGAGAGGAAATTGCCTGGGTATTTTGACAGGGAGGTTTATAATATTCTCGATTCGCCGTCGTCCACGGCAGCGGCTGCGGCGGCGGAGACTCCGGTGGCGGTGGCGGAGGCGGCGTCGGCGGGGGATGAGGAGGTGCACCTCTATGATAGTAATCGGAGGGTTGGGAGTGAGGATGGGTTGTTCTCGGATTCTGAGAAGGACGAGGTTTTGCTTTTAGCCGCTGCCAAGGATGTTCCTGCACCTGTTCCTCTCTCAGAGAAGCAATATCAGCCGCATCTCCATGGGTGTGAAGGGGAAGGCAACCCTCAAGGTACTACCAATGGGAAACGGGCAACCCCAAATCCAGAAATGGGTTCTACATCTCAAGGGGAACGGAAGAGGAAGCGGTTAGCAACCGACGGAGAGGAGGAAACTTTGCAAAGCCAATTAATTGATGTCTTAGAAAAGAATGGCAAAATGCTACATGATCAACTTGAAGCTCAGAACCTGAATTTCCAGTTGGATCGCCAACAGCAGAAAGACACTGCAAGTAACATAGTTGCTGTACTTGATAAGCTTGCAGATGCTCTAGGGAGAATTGCTGATAAATTGTAG

Predicted protein sequences of Glyma18g51790

Limit To All Plant Sequences

>Glyma18g51790.1   sequence type=predicted peptide   gene model=Glyma18g51790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALDQPSNPNAVDGAGNGATPCSAADGGDDGRPAARLPRWTRQEILVLIQGKSDAESRFRPGRGSGSAFGSGEPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQVRDEAESFWLMRNDLRRERKLPGYFDREVYNILDSPSSTAAAAAAETPVAVAEAASAGDEEVHLYDSNRRVGSEDGLFSDSEKDEVLLLAAAKDVPAPVPLSEKQYQPHLHGCEGEGNPQGTTNGKRATPNPEMGSTSQGERKRKRLATDGEEETLQSQLIDVLEKNGKMLHDQLEAQNLNFQLDRQQQKDTASNIVAVLDKLADALGRIADKL*

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