SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09730 | AT | Annotation by Michelle Graham. TAIR10: Cysteine proteinases superfamily protein | chr1:3148017-3154236 REVERSE LENGTH=931 | SoyBase | E_val: 2.00E-78 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0016926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein desumoylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008234 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity | SoyBase | N/A | ISS |
| GO:0016929 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: SUMO-specific protease activity | SoyBase | N/A | ISS |
| KOG4658 | KOG | Apoptotic ATPase | JGI | ISS | |
| PTHR12438 | Panther | UBIQUITIN-LIKE PROTEASE PROTEIN 2 | JGI | ISS | |
| PTHR12438:SF7 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| PF00931 | PFAM | NB-ARC domain | JGI | ISS | |
| PF02892 | PFAM | BED zinc finger | JGI | ISS | |
| PF02902 | PFAM | Ulp1 protease family, C-terminal catalytic domain | JGI | ISS | |
| UniRef100_B9N1L5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: BED finger-nbs-lrr resistance protein n=1 Tax=Populus trichocarpa RepID=B9N1L5_POPTR | SoyBase | E_val: 4.00E-115 | ISS |
| UniRef100_I1N4Y0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N4Y0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g51765 not represented in the dataset |
Glyma18g51765 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g281700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g51765.1 sequence type=CDS gene model=Glyma18g51765 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGAGGCGTGTAGTAGTAGAAGAAAAAGGGGGGGTCGGCCTAAAAGTAAATACTGGAGTGAAGCTGAAAAATTAGAAGGTAAAAATATGTGGAAGTGCAACCATTGTAAACATGAATTTGCCGGAGGTGCTACAAGAATTGAAGAGCATATCACTGGCAAAGGAAACAATATTACAAAATGCCCAAAATATGGTGCCCATGAAGAAGATGAAATTAACTTGGGAGACCAGATAGTGGAGCATGATTCTGCTGCATTTAAAAAGGCGTATCCAAAGGGGGACCCTGATGCTGTTTGTATCAAAAAGAGCGATATTGAGCTTTTACAGCCTGAGAAATGCCTTAATGATACTATCATTGACTTTTATATCAATTATTTGAAAAATAAACTTCCAAGCGATAAACAAGACAGGTTTCACTTTTTCAATTGCTTTTTCTTTGCTAAGCTTGCTGGTTTAAGCAGAAATGATACATCAATTGCTTGTGATGGTAAAGCAGCATTTCAGCGTGTAAGCACTTGGGGAAGAAAAGTCAACCTTTTTAAAACGGATTATATCTTCATTCCCATAAACTATAGTCTTCACTGGAGTTTGATTGTCATTTGTCACCCTGCTGAAGTCATGACATGCTACAGAGATGAAGAAACTAAGGGATCTCCCAAAGAAGCTTGCATCTTGCACATGGATTCCCGAAAAGGAATTCATGTACATCTCCAGAATGTTTTCCAAAGTTATCTATGTGAAGAATGGAAAGAGAGGCACAACAATGTGAGGGATGATGTTTCTCCTAAATTTTTAGATCTTCCATTCGTGCCACTTGAGCTGCCTCAGCAACAAAATGCATACGATTGTGGCATCTTTTTGCTCCACTATGTGGAACATTTTCTGGAACAAGCTCCAATCAACTTTAACCGTTCAACCAAGTTCAGTGTTCCTCCACCAGATGCTTCTCTGAAACGATCTCATATACAGAAACTATTAATAGCGGCTGAAGGAGACAGTAAAATGATTGTTGGTGGTTCAGTTAACCCTCAAAACAATACACAATTCTCAGCTGCTTTATTAGGAGGTGATGTAGAAGATCATGCTGTGAACGGAGGTAGCAATGGCGATGATGCTTTGACTATAAATAATTTGCTATCCGATCTAGCAAGGGAAGAAGACTACTTTGATAAAGAATTACAGTGGCGGGAGTTCCAGGCCATTAAGCGCAAGAGACAAGATGACGATTGGTCGGATAAACTAAAGGACCTGAAAAAAAGAGTTATTGATGTGAAAAACTCACTGCATCAGTCTGGGTCGACTAATGAATTGCCCAAGCCTTCTGAATTGCATGCTAAGTTTATTTATTTATTGATAGAGAAGCTTTGGGAGTTGCGAGATGAAAATGTGAAGAAGATGTGGGATCTTCTGGAGGATGAGGAAGTCTTCATTATTGGCATAGATGGAATGGGGGGAGTTGGAAAAACATTCATGGCAACTCATTTCAAGAATGAGATTAAAAGAAAGGGGACTTTCAAGGATGTCTTCTGGGTCACTGTTTCCCATGATTTCACCATTTTCAAATTGCAACATCACATTGCAGAAACAATGCAGGTTAAGCTTTACGGAGATGAGATGACCAGAGCAACAATTTTGACGTCAGAGTTGGAGAAAAGAGAAAAAACACTGCTTATTTTGGATGATGTTTGGGAATATATTGATCTGCAAAAGGTGGGGATTCCTCTTAAAGTGAATGGCATTAAATTGATTATCACAACTCGTTTGAAACATGTGTGGCTACAGATGGATTGCCTACCAAATAATACAATAACAATATTCCCCTTTGATGAACTAGAAGAAGAAGCTTGGGAGTTATTTTTGCTAAAACTTGGACACCGTGGAACACCTGCAAGACTTCCCCCTCATGTACTAGAGATTGCAAGATCTGTTGTAATGAAATGTGATGGTTTACCACTTGGAATCAGTGCGATGGCTCGAACCATGAAAGGGAAAAATGAGATCCATTGGTGGAGACATGCATTGAATAAACTTGACAGATTGGAAATGGGAGAAGAGGTCTTAAGCGTACTAAAACGTAGCTATGACAATTTAATTGAAAAGGACATCCAAAAATGTTTCTTACAGTCTGCACTGTTTCCTAATCATATTTTTAAAGAGGAATGGGTTATGATGCTTGTTGAGAGTGGGTTGTTAGATGGAAAGAGGAGTTTGGAGGAAACATTTGATGAGGGACGTGTCATAATGGATAAACTCATTAACCATTCTTTGTTGTTAGGTTGTTTGATGTTACGAATGAATGGTCTGGTGAGGAAGATGGCGTGCCATATCTTGAACGACAATCACACTTACTTGATAAAATGTAATGAAAAATTGAGAAAGATGCCTCAGATGCGGGAATGGACAGCTGATCTGGAGGCAGTTTCTTTGGCGGGTAATGAGATAGAAGAAATAGCAGAGGGCACATCACCTAATTGTCCACGCTTGTCCACCTTCATCTTATCTCGTAATTCCATCAGTCATATTCCCAAGTGTTTTTTCAGACGCATGAACGCTCTAACACAACTTGATTTATCATTTAATCTTAGATTAACATCTTTGCCAAAGTCGCTGTCTAAGTTGAGGTCTCTTACTTCTTTAGTGCTCCGTCAATGTTCAAAATTGAAAGATATACCTCCACTGGGAGATCTACAAGCATTGTCAAGATTGGACATTTCAGGTTGTGATTCGCTCCTCAGGGTACCGGAAGGCTTGCAAAATCTAAAAAAGTTGCAATGCCTTAATCTTTCCCGCGATTTGTATTTATCATTGTTACCCGGATGCGCACTGCCCGGTTTGAGCAATATGCAATATCTGGATCTCCGGGGTTCGTCAGGTATAAAAGTAGAAGATGTAAAAGGGATGACTATGCTTGAATGTTTTGCAGTAAGCTTTCTCGATCAGGATTACTACAACCGTTATGTGCAAGAAATTCAGGACACTGGTTATGGACCTCAAATCTATTTTATCTATTTTGGAAAATTTGATGATTACACACTTGGATTTCCTGAGAATCCTATTTATCTTTGTCTTGAATTCAAGCGTCGAAGGGTATGTTTTGGAGATTGCGATGAATTACCCTATTTACTGCCAAGAGACCTTACGGAATTACTTGTAAGTGGCAATGATCAATGGGAATGCTTATGTGCTCCTCTGTCATCTAATGGTCCTCTATCTTTAAAGGACATTAACATTAAACACTGTACAAAATTGAAGAGTTTATTCTGTGTATCTTGTTCCTTATGCACTAATATCCAAAACCTCAAATCTTTGAAACTTGATAATTTGGGTAGTTTAAGTGTCCTCTGCAAGGAAGATGTTGCTGGTTTAACACAATCTTTATCTCGGAGTGGGGTGTTTTCTCATCTCAAGGAATTGAGTATCGAGAAATGCCATCAGATAGAGAAGTTGCTGACGCCAGGGTTAGTGCCACAACTTCAAAACCTGGCGTCTATATCGGTAGAGGACTGCGAATCAATAAAGGAGATATTTGCGGGAGATAGTTCCGACAACATTGCACTTCCCAATTTAACCAAATTGCAACTACGCTATTTACCAGAATTACAGACAGTGTGCAAAGGAATTTTACTCTGTAACTCTGAGTATATATTCTACATCAAGGATTGTCCCAATTATGAAACACCCAGAATTGGTGGTCGTGTATGA
>Glyma18g51765.1 sequence type=predicted peptide gene model=Glyma18g51765 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDEACSSRRKRGGRPKSKYWSEAEKLEGKNMWKCNHCKHEFAGGATRIEEHITGKGNNITKCPKYGAHEEDEINLGDQIVEHDSAAFKKAYPKGDPDAVCIKKSDIELLQPEKCLNDTIIDFYINYLKNKLPSDKQDRFHFFNCFFFAKLAGLSRNDTSIACDGKAAFQRVSTWGRKVNLFKTDYIFIPINYSLHWSLIVICHPAEVMTCYRDEETKGSPKEACILHMDSRKGIHVHLQNVFQSYLCEEWKERHNNVRDDVSPKFLDLPFVPLELPQQQNAYDCGIFLLHYVEHFLEQAPINFNRSTKFSVPPPDASLKRSHIQKLLIAAEGDSKMIVGGSVNPQNNTQFSAALLGGDVEDHAVNGGSNGDDALTINNLLSDLAREEDYFDKELQWREFQAIKRKRQDDDWSDKLKDLKKRVIDVKNSLHQSGSTNELPKPSELHAKFIYLLIEKLWELRDENVKKMWDLLEDEEVFIIGIDGMGGVGKTFMATHFKNEIKRKGTFKDVFWVTVSHDFTIFKLQHHIAETMQVKLYGDEMTRATILTSELEKREKTLLILDDVWEYIDLQKVGIPLKVNGIKLIITTRLKHVWLQMDCLPNNTITIFPFDELEEEAWELFLLKLGHRGTPARLPPHVLEIARSVVMKCDGLPLGISAMARTMKGKNEIHWWRHALNKLDRLEMGEEVLSVLKRSYDNLIEKDIQKCFLQSALFPNHIFKEEWVMMLVESGLLDGKRSLEETFDEGRVIMDKLINHSLLLGCLMLRMNGLVRKMACHILNDNHTYLIKCNEKLRKMPQMREWTADLEAVSLAGNEIEEIAEGTSPNCPRLSTFILSRNSISHIPKCFFRRMNALTQLDLSFNLRLTSLPKSLSKLRSLTSLVLRQCSKLKDIPPLGDLQALSRLDISGCDSLLRVPEGLQNLKKLQCLNLSRDLYLSLLPGCALPGLSNMQYLDLRGSSGIKVEDVKGMTMLECFAVSFLDQDYYNRYVQEIQDTGYGPQIYFIYFGKFDDYTLGFPENPIYLCLEFKRRRVCFGDCDELPYLLPRDLTELLVSGNDQWECLCAPLSSNGPLSLKDINIKHCTKLKSLFCVSCSLCTNIQNLKSLKLDNLGSLSVLCKEDVAGLTQSLSRSGVFSHLKELSIEKCHQIEKLLTPGLVPQLQNLASISVEDCESIKEIFAGDSSDNIALPNLTKLQLRYLPELQTVCKGILLCNSEYIFYIKDCPNYETPRIGGRV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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