Glyma18g51715 - SoyBase

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Report for Sequence Feature Glyma18g51715

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60515661
stop:	60521752
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51715

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09730	AT	Annotation by Michelle Graham. TAIR10: Cysteine proteinases superfamily protein \| chr1:3148017-3154236 REVERSE LENGTH=931	SoyBase	E_val: 6.00E-80	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0016926	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein desumoylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity	SoyBase	N/A	ISS
GO:0016929	GO-mf	Annotation by Michelle Graham. GO Molecular Function: SUMO-specific protease activity	SoyBase	N/A	ISS
KOG4658	KOG	Apoptotic ATPase	JGI		ISS
PTHR12438	Panther	UBIQUITIN-LIKE PROTEASE PROTEIN 2	JGI		ISS
PTHR12438:SF7	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF00931	PFAM	NB-ARC domain	JGI		ISS
PF02902	PFAM	Ulp1 protease family, C-terminal catalytic domain	JGI		ISS
UniRef100_B9IP02	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nbs-lrr resistance protein n=1 Tax=Populus trichocarpa RepID=B9IP02_POPTR	SoyBase	E_val: 1.00E-115	ISS
UniRef100_I1N4X9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4X9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g51715

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g51715 not represented in the dataset	Glyma18g51715 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g51715 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g281500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g51715

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g51715

Limit To All Plant Sequences

>Glyma18g51715.1   sequence type=CDS   gene model=Glyma18g51715   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGGGCTAGTAGCAGTAAAAGAAAAAGAAAAAGGGGAGGTCGGCCCAAAAGTAATTACTGGAATGAAGTTGAAAAAATAGGTGACATGTGGAAGTGCAACCATTGTGAAGGGGAGTTCCATGGAGGTGCTACAAGAATTAAAGAGCATATCATTGGTGGAGGAAAAAATATTAGAAAATGCCCCCACTATCCTGCTTCCGGTTCAATTACACGGAATCAATTACAAGAAGATGTGGAGCATGATTCTGCTGCATTTAAAAGCAATGACATGGAAAAGGCAATTTGTTATCCAAAGGGGGACCCTGATGCTATTTACATCAGGAAGAGCGATATTGAGCTTTTACAGCCTGAGAAATGCCTTAATGATAATATCATTGACTTTTATATAAAGTATTTGATAAATAATAAACTCCCAAGTGATAAACAGAAGAGGTTTCACTTTTTCAATTGCTTTTTCTTTCCTAAGCTTGTTGATTTAAGCACAGATAATCGTTCAATTGCTTGTGATGGTAAAGCAGCATTTCAGCGTGTAAGCAATTGGACAAGAAAAGTGAACCTTTTTGAAAAGGATTATATCTTCATTCCCATAAACTATAGTCTTCATTGGAGTTTGATTGTCATTTGTCACCCTGCTGAAGTCATGACATGCTACAGAGATGAAGAAACTAAGGGATCTCCCAAAGAAGCTTGCATCTTGCACATGGATTCCCGAAAAGGAATTCATCAAGATCTCCACAATGTTTTCCAAAGTTATCTATGTGAAGAATGGAAAGAGAGGCACAACAATGTGAGGGATGATGCTTCTTCTAAATTTTTAGATCTTCCATTCGTGCCACTTGAGCTGCCTCAGCAACAAAATGCATACGATTGTGGCATCTTTTTGCTCCACTATGTGGAACGTTTTCTGGAAAAAGCTCCAATCAACTTTAACCGTTCCCTGATAACCAACTTCAGTTCTTGGTTCCCTCCACTAGATGCTTCTCTGAAACGATCTCATATACAGAAACTATTAATAGTTGAAGGAGGCAACAAAATGATTGATGGTGATTCAGTTAACTCTCAAAACAATACAAAATTGTCAGCTTCAGCAGGAGGTGATGTAGAAGATCATGCTGTGAACGGAGGTAGCAATGGCGATGATGCTTTGACTATAAATAAGTTGCTATCCGATCTAGCAAGGCAAGAAGACTACTTTGATAAAAGCTTACAGTGGCGGGAGTTCCAGGGCAAGAAGCGCAAGAGACAAGATGACAATTGGTTGGATAAACTAAAGGACCTGAAAAAAAGAGCCATTGATGTGAAAAACTCACTGCATCAGTCTGGGTCGACTAATGAATTCCCCAAGCCTTCTGAATTGGGTGATGAGTTTTTTTATTTATCGATAGAGAAGCGTTGGGCGTCGCGAGATAAAAAAGTGGAGAACATGTGGGATCTTCTGGAGGATGAGGAAGTCTTCATTATTGGCATAGATGGAATGGGGGGAGTTGGAAAAACATTCATGGCAACTCATATCAAGAATGAGATTAAAAGAAAGGGGACTTTCAAGGATGTCTTCTGGGTCACTGTTTCCCATGATTTCACCAATTTCAAATTGCAACATGACATTGCAGAAACAATACAGGTTAAGCTTTACGGAGATGAGATGACTAGAGCAACAATTTTGACGTCAGAGTTGGAGAAAAGAGAAAAAGCACTGCTTATTTTGGATGATGTTTGGGAATATATTGATCTGCAAAAGGTGGGGATTCCTCTTAAAGTGAATGGCATTAAATTGATTATCACAACTCGTTTGAAACATGTGTGTCTACAGATGGATTGCCAACCATATAATATAATAACAATATTCCCCTTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGCTTGGGAGTTATTTTTGCTAAAACTTGGACACCGTGGAACACCTGCAAGACTTCCCCCTCATGTACTAGAGATTGCAAGATCTGTTGTAATGAAATGTGATGGTTTACCACTTGGAATCAGTGTGATGGCTCGAACCATGAAAGGGAAAAATGAGATCCATTGGTGGAGACATGCATTGAATAAACTTGACAGATTGGAAATGGGAGAAGAGGTCTTAAGCGTACTAAAACGTAGCTATGACAATTTAATTGAAAAGGACATCCAAAAATGTTTCTTACAGTCTGCACTGTTTCCTAATGCTGATGAAGGGAAATGGGCTATGATGATTGTTGAGAGTGGGTTGTTAAATGGAAAGGGGAGTTTGGAGGAAATATTTGATGAGGCACGTGTCATAGTGGATAAACTCATAAACCATTCTTTGTTGTTAGGTTATTGGAGTTTACGAATGAATGGTCTGTTGAGGAAGATGGCGTGCAATATCTTGAACGAGAATCACACTTACATGATAAAATGTCATGAAAATTTGAGAAAGATACCTCAGATGCGGGAATGGACAGCTGATCTGGAGGCAGTTTCTTTGGCGGGTAATGAGATAGAAGAAATAGCAGAGGGCACATCACCTAATTGTCCACGCTTGTCCACCTTCATCTTATCTCGTAATTCCATCAGTCATATTCCCAAGTGTTTTTTCAGACACATGAACGCTCTAACACAACTTGATTTATCATATAATCGTAGATTAACATCTTTGCCAAAGTCGCTGTCTAAGTTGAGGTCTCTTACTTCTTTAGTGCTCCGCCAATGTTCAAAATTGAAAGATATACCTCCACTGGGAGATCTACAAGCATTGTCAAGATTGGACATTTCCGGTTGTAATTCGCTCCTCAGGGTACCGGAAGGCTTGCAAAATCTAAAAAAGTTGCAATGGCTTAGTCTTTCCCGCAAGCTGAATTTATCATTAGTACCGTTATGCGTACTGCCCGGTTTGAGCAATATGCAATATCTGGATCTCCGCGGTTGGTCTGGTATAAAAGTAGAAGATGTAAAAGGGATGACTATGCTTGAATGTTTTGCAGTAAGCTTTCTCGATCAGGATTACTACAACCGTTCTGTGCAAGAAATTCAGGACACTGGTTATGGACCTCAAACCTATTTTATCTATTTTGGAAAATTTAAGGATTACACACTTGGATTTTCTGAGAATCTTATTTATGGTGAATTCAAGCATCGAAGGGTATGTTTTGGAGATTGCGATGGATTACACTATTTACTGCCAAGAGACCTTGCAGAATTACTTGTAAGTGGCAATGATCAATGGGAATGCTTATGTGCTCCTCTGTCATCTAATGGTTCTCTATCTTTAAAGCACATTACCATTCGGGACTGCACAAAATTGAAGAGTTTATTCTGTGTATCTTGTCCCTTATGCACTAATATCCAAAACCTCAAATCTTTGACACTTAATAATTTGGATAGTTTAAGTGTCATCTGCAAGGAAGATGTTGCTGGTTTAACACAATCTTTATCTCGGAGGGGGGTGTTTTCTCATCTCAAGGAATTGAGTATCAGTGGATGCCATCAAATAGAGAAGTTGCTGACGCCAGGGTTAGTGCCACAACTTCAAAACCTGAAGTCTATATCGGTATCGAACTGCCAATCAATAAAGGAGATATTTGCAGGAGATAGTTCCCACAACATTGCACTTCCCAATTTAACCAACTTGCAACTATACTGGTTACCAGACTTAAAGACAGTGTGCAAAGGAATTTTACTCATTAACTCTGAGGATATATTGCACATCAACAATTGTCCCAATTATGAAAAACCCAGAATTAGTCGTGTATGA

Predicted protein sequences of Glyma18g51715

Limit To All Plant Sequences

>Glyma18g51715.1   sequence type=predicted peptide   gene model=Glyma18g51715   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGASSSKRKRKRGGRPKSNYWNEVEKIGDMWKCNHCEGEFHGGATRIKEHIIGGGKNIRKCPHYPASGSITRNQLQEDVEHDSAAFKSNDMEKAICYPKGDPDAIYIRKSDIELLQPEKCLNDNIIDFYIKYLINNKLPSDKQKRFHFFNCFFFPKLVDLSTDNRSIACDGKAAFQRVSNWTRKVNLFEKDYIFIPINYSLHWSLIVICHPAEVMTCYRDEETKGSPKEACILHMDSRKGIHQDLHNVFQSYLCEEWKERHNNVRDDASSKFLDLPFVPLELPQQQNAYDCGIFLLHYVERFLEKAPINFNRSLITNFSSWFPPLDASLKRSHIQKLLIVEGGNKMIDGDSVNSQNNTKLSASAGGDVEDHAVNGGSNGDDALTINKLLSDLARQEDYFDKSLQWREFQGKKRKRQDDNWLDKLKDLKKRAIDVKNSLHQSGSTNEFPKPSELGDEFFYLSIEKRWASRDKKVENMWDLLEDEEVFIIGIDGMGGVGKTFMATHIKNEIKRKGTFKDVFWVTVSHDFTNFKLQHDIAETIQVKLYGDEMTRATILTSELEKREKALLILDDVWEYIDLQKVGIPLKVNGIKLIITTRLKHVCLQMDCQPYNIITIFPFEEEEEEEEEEEEEEKEEEEEAWELFLLKLGHRGTPARLPPHVLEIARSVVMKCDGLPLGISVMARTMKGKNEIHWWRHALNKLDRLEMGEEVLSVLKRSYDNLIEKDIQKCFLQSALFPNADEGKWAMMIVESGLLNGKGSLEEIFDEARVIVDKLINHSLLLGYWSLRMNGLLRKMACNILNENHTYMIKCHENLRKIPQMREWTADLEAVSLAGNEIEEIAEGTSPNCPRLSTFILSRNSISHIPKCFFRHMNALTQLDLSYNRRLTSLPKSLSKLRSLTSLVLRQCSKLKDIPPLGDLQALSRLDISGCNSLLRVPEGLQNLKKLQWLSLSRKLNLSLVPLCVLPGLSNMQYLDLRGWSGIKVEDVKGMTMLECFAVSFLDQDYYNRSVQEIQDTGYGPQTYFIYFGKFKDYTLGFSENLIYGEFKHRRVCFGDCDGLHYLLPRDLAELLVSGNDQWECLCAPLSSNGSLSLKHITIRDCTKLKSLFCVSCPLCTNIQNLKSLTLNNLDSLSVICKEDVAGLTQSLSRRGVFSHLKELSISGCHQIEKLLTPGLVPQLQNLKSISVSNCQSIKEIFAGDSSHNIALPNLTNLQLYWLPDLKTVCKGILLINSEDILHINNCPNYEKPRISRV*

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