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Report for Sequence Feature Glyma18g51626

Feature Type:gene_model
Chromosome:Gm18
Start:60481099
stop:60485989
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g51626
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G16030AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5238242-5240578 FORWARD LENGTH=339 SoyBaseE_val: 1.00E-66ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR24619Panther FAMILY NOT NAMED JGI ISS
PTHR24619:SF141Panther JGI ISS
UniRef100_D9ZBM6UniRef Annotation by Michelle Graham. Most informative UniRef hit: LuxR family transcriptional regulator (Fragment) n=1 Tax=Schiedea globosa RepID=D9ZBM6_9CARY SoyBaseE_val: 5.00E-67ISS
UniRef100_UPI000233F3F1UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F3F1 related cluster n=1 Tax=unknown RepID=UPI000233F3F1 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g51626
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g51626 not represented in the dataset
Glyma18g51626 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51626
ParalogEvidenceComments
Glyma08g28770 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51626 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g281000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g51626
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g51626
>Glyma18g51626.1   sequence type=CDS   gene model=Glyma18g51626   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAACAGCTGAGCCACTTCCTTATAGCTCAAGAAGAAGAGATGAGTCAGAGTTCAATTTGAGAGAATGGGCAGTGAAAGCTCGAATCAGCCGCGAGGGAACCAACTCCAGAAGGTACTCAGGATCTTACATGAGAAGCTTTAGAGAAGACACAAGATCATTTAGATCAAACATAACCATTTCTAGCACTGCTTCTTCACCCGGATACCTCTTAAAAGATGAAATAGACCCTTCAACATATTCTTTCACTACTGCTCTTAAAGCATTGCAAGCAAGGTCAAGCTATTACAGTTGGGAATGCTTATCTCCAGATGGTTTTGCTTTAAATTCAAAGTGGAATGAAGCAGAAAGGTATATATGCAACCCTCTCTCAGGGGAGGTACCATTGGAGTGTTTATCTGCAAAAACTCTTAGTGGAAGATCTTTTAGAAACTCAATAAACAGAATTGCCATGTCTGCTCCTCTAGTTTATTCCTCAAAGCACATTCCAACAAAGCCAGCAACTTTCACACAAGAAGAAGTGGCTCTTCAATTTCCCAATCCAGAAAAGAAGAAAGAGGGAATGACAAGAGATGTTGGTACTCAAAGTACACCTCCTTATATTAGTTCAACCAGTCCCAGCCCTGCTTCAACTCCATCCATCACAGAGAGATCAAAACCTCTAGTTTCTGACTCGCCTAACTCAAATGCAAAAACAAAATCCGAGGAAGAGGTGGAAGAGAAAGATAAGGAAACATGGGAGACAAAAGAAACAGAAAGAGAAAAGAAGGTGTGGAGGAAGCAAGAGGAGCAACTTTGCAAACTAAGTGGGTGCTTTTCGTGGATGAGAAAAAAAAAGGCAGAGAGAGAGAAAGAAAGACAAAGAAGGAATAACATCTTTCTCACTCACTTCAAAGGTAGCAAAAGATAA
Predicted protein sequences of Glyma18g51626
>Glyma18g51626.1   sequence type=predicted peptide   gene model=Glyma18g51626   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTAEPLPYSSRRRDESEFNLREWAVKARISREGTNSRRYSGSYMRSFREDTRSFRSNITISSTASSPGYLLKDEIDPSTYSFTTALKALQARSSYYSWECLSPDGFALNSKWNEAERYICNPLSGEVPLECLSAKTLSGRSFRNSINRIAMSAPLVYSSKHIPTKPATFTQEEVALQFPNPEKKKEGMTRDVGTQSTPPYISSTSPSPASTPSITERSKPLVSDSPNSNAKTKSEEEVEEKDKETWETKETEREKKVWRKQEEQLCKLSGCFSWMRKKKAEREKERQRRNNIFLTHFKGSKR*






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