Glyma18g51600 - SoyBase

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Report for Sequence Feature Glyma18g51600

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60468086
stop:	60470084
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13280	AT	Annotation by Michelle Graham. TAIR10: allene oxide cyclase 4 \| chr1:4547624-4548552 FORWARD LENGTH=254	SoyBase	E_val: 7.00E-80	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016853	GO-mf	Annotation by Michelle Graham. GO Molecular Function: isomerase activity	SoyBase	N/A	ISS
GO:0046423	GO-mf	Annotation by Michelle Graham. GO Molecular Function: allene-oxide cyclase activity	SoyBase	N/A	ISS
PF06351	PFAM	Allene oxide cyclase	JGI		ISS
UniRef100_F6KBT6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Allene oxide cyclase 6 n=1 Tax=Glycine max RepID=F6KBT6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_F6KBT6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Allene oxide cyclase 6 n=1 Tax=Glycine max RepID=F6KBT6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g51600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51600

Paralog	Evidence	Comments
Glyma08g28750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g280900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g51600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g51600

Limit To All Plant Sequences

>Glyma18g51600.1   sequence type=CDS   gene model=Glyma18g51600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCTACTCAAGCCATGCTTTGAAAACCATCCCTTTTTCTTCCTTTGTGAAGCCTGTCAGTACCAAACCAACATCATTCTTCACACCTTCACCTACCAAACCTTTCTTACCCTTCACCTCACCAAACCACTCTCTCACCAAAAATCTCAAGCTGAACTCCACTTTGCCACACTTTTGCTTGTCTTCAGTTCCCAAGAAATCTTTCACTTGTAGAAGCCAGGCTGAGCCTGTTGACTCAGAAAAAGTCCAAGAACTGAGTGTGTATGAGATCAACGAGCGTGACCGTGGAAGCCCCGTTTATCTTCGATTGAGCTATAAAAGTGTCAATTCCCTTGGTGATTTAGTCCCCTTTAGCAACAAGTTGTACACTGGAGATTTGCAAAAGCGCATTGGGATAACATCTGGTATCTGTATTTTGATCCAAAACAAAGCTGAAAAGAAAGGGGACAGGTATGAAGCAATCTTCAGCTTCTACTTTGGAGACTATGGTCACATAGCAGTGCAGGGACCTTACCTGACCTATGAGGACACATATTTGGCTGTGACTGGTGGGTCTGGCATATTTGAGGGTGTTAAAGGTCAAGTGAAGCTGCGTCAGATTGTGTATCCTTTCAAGATTTTGTACACATTTTATCTAAAGGGTATCAAGGATTTGCCTCAGGAGCTTCTTGTCAAGACTGTTGAGCCAATTCCATCTGTTGAACCTTCCCCTGCTGCTAAGGCCCTTGAGCCCAATGCTACCATTGCTGGCTTCACCGACTAA

Predicted protein sequences of Glyma18g51600

Limit To All Plant Sequences

>Glyma18g51600.1   sequence type=predicted peptide   gene model=Glyma18g51600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAYSSHALKTIPFSSFVKPVSTKPTSFFTPSPTKPFLPFTSPNHSLTKNLKLNSTLPHFCLSSVPKKSFTCRSQAEPVDSEKVQELSVYEINERDRGSPVYLRLSYKSVNSLGDLVPFSNKLYTGDLQKRIGITSGICILIQNKAEKKGDRYEAIFSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVKGQVKLRQIVYPFKILYTFYLKGIKDLPQELLVKTVEPIPSVEPSPAAKALEPNATIAGFTD*

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