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Report for Sequence Feature Glyma18g51581

Feature Type:gene_model
Chromosome:Gm18
Start:60439291
stop:60442765
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g51581
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G67260AT Annotation by Michelle Graham. TAIR10: TCP family transcription factor | chr1:25168152-25169307 REVERSE LENGTH=351 SoyBaseE_val: 2.00E-33ISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF03634PFAM TCP family transcription factor JGI ISS
UniRef100_Q84N90UniRef Annotation by Michelle Graham. Most informative UniRef hit: LEGCYC1B n=1 Tax=Cadia purpurea RepID=Q84N90_9FABA SoyBaseE_val: 3.00E-148ISS
UniRef100_UPI0002337C52UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337C52 related cluster n=1 Tax=unknown RepID=UPI0002337C52 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g51581
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g51581 not represented in the dataset
Glyma18g51581 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51581
ParalogEvidenceComments
Glyma08g28691 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51581 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g280700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g51581
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g51581
>Glyma18g51581.2   sequence type=transcript   gene model=Glyma18g51581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATATTAACGGGCTCAAAAGCTTAATGATTTGACTCTTGCTTACGTTGCTTTTACATAATGAGGCACACAATCCACCAATTATGTGTCTTATCCTATGTGTTACTGTTACTCATACATACCTATACTCTTTCTCTCTCTCTCCAGTCCCCACCCCTGTGAGCATGGTCCTGCACCGGCACACACACCCTGATAAATAAATATATATAGAGCTGTATTCCCAGTCTAATGGAAACTGTGCAAAGCAAACCAAAGTTCCATCATTGGCCTAAACCCATCATCACTTCCTCAAACCCTTTTCTTTTCCCTCCTCGTATGTGTTCTAGTATATGTTAAATTTAGAAAAATAGTTAATTTCCCTTGCAAAGAAATTTTTTATATATATATATATATATAAAAGTGTATTCCTAGAGCTAAGGAAGCAAACTAGGAAGATAGATAAGATACCCTCTTCCTGCGTTTGGTGTGGTCCTCATTATTCCACAGAACCTGTCTAGGGTTTCTGTCCATTGGAAATTGCAAAATCTGCATATGTAAACATGTTCCCTTCCACTAATTATACCTCCTCAGGCTCTTACCCTCGTTTCCCTTCATCTTCTTCTTCCACTTCACCCTATCCTTCTTTTACTCTCCTTCATCCTGAAAATTCTTCTTCCAGCAACAACACCTTTCTTCATGATCCACTTGCTCTTACCTACATACCCTCTCATTACCATGCTCCAATCCCAGAAACACTAGCCAATTGGGCAGTTGCAGATTGTGCAATACTGAATCAGGATCTAGGTGGTGCCCTTTATGGCATCACCAAGAAACCAATGAAGAAAGCAACTAAGAAAGACAGGCACAGCAAGATTCATACTTCTCAGGGTTTGAGGGACAGAAGGGTTAGGCTTTCCATTGAGATCGCACGCAAGTTCTTTGATCTTCAAGATATGTTAGGGTTTGACAAAGCCAGCAACACCCTTGACTGGCTCTTCACAAAGTCCAAGAAGGCAATTAAGGAGCTTACTCGAAGCAAGCACAGTGTTGAAAGCTTCGAGTTCTCCTCATCTTCCGAGGGTGAAGTAGTTTCTACTATCCAGCAACAAGACCTACAACAACAACATGGGATAAATTTGGAAAATGGGAAGTTGAAAGAACCTGCAGCTTATTGTGTTAAAGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGGGAAAAGACTAGTAGCAAGGTATTGTGCAACACAAGTGGCGAAGGGAAGGTGCAAGAGTTGAAGAAAAAGTGCCCTGCAACTGAAAACCCTCAAATCCTGAACCAGTTAAGGTCAACCCTTCAACCTCCTCATCCTCAAAATGTGGGTGGAGAAGTGCCAAGAGATGATGACTTCAACGTTATTGAGGAATCCATTGTCATCAGAAGAAAGTTGAAACACACTTTGATGTCTTCCAATATTCATCATCAAAACGCTGTGATCCCTAAGGAAGCAAGTGTAAACAACAGTGACTACCACTCCTTCCCCAATTTGTCTCCAAATTGGGAAGCTAATAATGGTGCCAATGGACGCTCCACCTTTTGTGCAATAGCCAGCATGAATCTGTCTACAGGGCTTCAAATTTTTGGAAAATCTTGGGAGGAGTGCACCAATCCTCATCCAAGCTAATATGTTAGCTTTCAGTATTATCCGATGATTGTCTCTAGTGTTTTGCTAAGAAACATCATGGTCATGGAGGCATCTTTCTGTGTTTTTCTACCTGTAACTTTTTCTGTCCTATATTTCCTTTCTACAATGTACTGATTTTTTGTTGTTGCTCTATATCAGCCAAGAAGGGCATGTGACAGTTGGCAAAAAAGGATGCTTCGTGTATAATTTCTGACCAATATTTTAAGTGTGGCTGATATTATAAGGGTCAAATATATTTATCAGGAACCGTCCTTTCTTTTGCTAGCTGATTTCAATTTTTATATAATTAGTTTTTGATCAATATATATTGATTAATAATTGTTGAAAACCTTTAAATTAGCTAGCTATATCCTTTGGTCATTGTAAGAGAAGGATGTGCAGAAGAAAATTCAAGATATTTTAGCTTTGATTGAAGTACAGAACTATACATGTTAGGCATGCATCTGCTAATCATCCTGTTAGCACTTCGGAGTCCATGCGCTCAAGACTTAACGATGACTTTGTCAGAACGTTTTTAAACATTATGGATCGATATCCAGCGGTGGACAAAATAAATATCCAATCTGATTAAGTACACTACACCCTTGACTGGCTGTTCACTTATAAGTACAAGAAAAAAATTAAGGAGCTAACTCAAGATGCAAGTATTCAATCTTTATTTTGTTCACTTTCTTATTACAACAGCAGCAATTCTGTTTACTTTCTTTTTCTTATTTAACTTCT
Coding sequences of Glyma18g51581
>Glyma18g51581.1   sequence type=CDS   gene model=Glyma18g51581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCCTTCCACTAATTATACCTCCTCAGGCTCTTACCCTCGTTTCCCTTCATCTTCTTCTTCCACTTCACCCTATCCTTCTTTTACTCTCCTTCATCCTGAAAATTCTTCTTCCAGCAACAACACCTTTCTTCATGATCCACTTGCTCTTACCTACATACCCTCTCATTACCATGCTCCAATCCCAGAAACACTAGCCAATTGGGCAGTTGCAGATTGTGCAATACTGAATCAGGATCTAGGTGGTGCCCTTTATGGCATCACCAAGAAACCAATGAAGAAAGCAACTAAGAAAGACAGGCACAGCAAGATTCATACTTCTCAGGGTTTGAGGGACAGAAGGGTTAGGCTTTCCATTGAGATCGCACGCAAGTTCTTTGATCTTCAAGATATGTTAGGGTTTGACAAAGCCAGCAACACCCTTGACTGGCTCTTCACAAAGTCCAAGAAGGCAATTAAGGAGCTTACTCGAAGCAAGCACAGTGTTGAAAGCTTCGAGTTCTCCTCATCTTCCGAGGGTGAAGTAGTTTCTACTATCCAGCAACAAGACCTACAACAACAACATGGGATAAATTTGGAAAATGGGAAGTTGAAAGAACCTGCAGCTTATTGTGTTAAAGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGGGAAAAGACTAGTAGCAAGGTATTGTGCAACACAAGTGGCGAAGGGAAGGTGCAAGAGTTGAAGAAAAAGTGCCCTGCAACTGAAAACCCTCAAATCCTGAACCAGTTAAGGTCAACCCTTCAACCTCCTCATCCTCAAAATGTGGGTGGAGAAGTGCCAAGAGATGATGACTTCAACGTTATTGAGGAATCCATTGTCATCAGAAGAAAGTTGAAACACACTTTGATGTCTTCCAATATTCATCATCAAAACGCTGTGATCCCTAAGGAAGCAAGTGTAAACAACAGTGACTACCACTCCTTCCCCAATTTGTCTCCAAATTGGGAAGCTAATAATGGTGCCAATGGACGCTCCACCTTTTGTGCAATAGCCAGCATGAATCTGTCTACAGGGCTTCAAATTTTTGGAAAATCTTGGGAGGAGTGCACCAATCCTCATCCAAGCTAA

>Glyma18g51581.2   sequence type=CDS   gene model=Glyma18g51581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCCTTCCACTAATTATACCTCCTCAGGCTCTTACCCTCGTTTCCCTTCATCTTCTTCTTCCACTTCACCCTATCCTTCTTTTACTCTCCTTCATCCTGAAAATTCTTCTTCCAGCAACAACACCTTTCTTCATGATCCACTTGCTCTTACCTACATACCCTCTCATTACCATGCTCCAATCCCAGAAACACTAGCCAATTGGGCAGTTGCAGATTGTGCAATACTGAATCAGGATCTAGGTGGTGCCCTTTATGGCATCACCAAGAAACCAATGAAGAAAGCAACTAAGAAAGACAGGCACAGCAAGATTCATACTTCTCAGGGTTTGAGGGACAGAAGGGTTAGGCTTTCCATTGAGATCGCACGCAAGTTCTTTGATCTTCAAGATATGTTAGGGTTTGACAAAGCCAGCAACACCCTTGACTGGCTCTTCACAAAGTCCAAGAAGGCAATTAAGGAGCTTACTCGAAGCAAGCACAGTGTTGAAAGCTTCGAGTTCTCCTCATCTTCCGAGGGTGAAGTAGTTTCTACTATCCAGCAACAAGACCTACAACAACAACATGGGATAAATTTGGAAAATGGGAAGTTGAAAGAACCTGCAGCTTATTGTGTTAAAGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGGGAAAAGACTAGTAGCAAGGTATTGTGCAACACAAGTGGCGAAGGGAAGGTGCAAGAGTTGAAGAAAAAGTGCCCTGCAACTGAAAACCCTCAAATCCTGAACCAGTTAAGGTCAACCCTTCAACCTCCTCATCCTCAAAATGTGGGTGGAGAAGTGCCAAGAGATGATGACTTCAACGTTATTGAGGAATCCATTGTCATCAGAAGAAAGTTGAAACACACTTTGATGTCTTCCAATATTCATCATCAAAACGCTGTGATCCCTAAGGAAGCAAGTGTAAACAACAGTGACTACCACTCCTTCCCCAATTTGTCTCCAAATTGGGAAGCTAATAATGGTGCCAATGGACGCTCCACCTTTTGTGCAATAGCCAGCATGAATCTGTCTACAGGGCTTCAAATTTTTGGAAAATCTTGGGAGGAGTGCACCAATCCTCATCCAAGCTAA
Predicted protein sequences of Glyma18g51581
>Glyma18g51581.1   sequence type=predicted peptide   gene model=Glyma18g51581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFPSTNYTSSGSYPRFPSSSSSTSPYPSFTLLHPENSSSSNNTFLHDPLALTYIPSHYHAPIPETLANWAVADCAILNQDLGGALYGITKKPMKKATKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSVESFEFSSSSEGEVVSTIQQQDLQQQHGINLENGKLKEPAAYCVKAKMKESREKARARAREKTSSKVLCNTSGEGKVQELKKKCPATENPQILNQLRSTLQPPHPQNVGGEVPRDDDFNVIEESIVIRRKLKHTLMSSNIHHQNAVIPKEASVNNSDYHSFPNLSPNWEANNGANGRSTFCAIASMNLSTGLQIFGKSWEECTNPHPS*

>Glyma18g51581.2   sequence type=predicted peptide   gene model=Glyma18g51581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFPSTNYTSSGSYPRFPSSSSSTSPYPSFTLLHPENSSSSNNTFLHDPLALTYIPSHYHAPIPETLANWAVADCAILNQDLGGALYGITKKPMKKATKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSVESFEFSSSSEGEVVSTIQQQDLQQQHGINLENGKLKEPAAYCVKAKMKESREKARARAREKTSSKVLCNTSGEGKVQELKKKCPATENPQILNQLRSTLQPPHPQNVGGEVPRDDDFNVIEESIVIRRKLKHTLMSSNIHHQNAVIPKEASVNNSDYHSFPNLSPNWEANNGANGRSTFCAIASMNLSTGLQIFGKSWEECTNPHPS*






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