SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G10780 | AT | Annotation by Michelle Graham. TAIR10: LRR and NB-ARC domains-containing disease resistance protein | chr4:6634779-6637457 REVERSE LENGTH=892 | SoyBase | E_val: 1.00E-53 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| GO:0043531 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ADP binding | SoyBase | N/A | ISS |
| KOG4658 | KOG | Apoptotic ATPase | JGI | ISS | |
| PTHR23155 | Panther | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | JGI | ISS | |
| PF00931 | PFAM | NB-ARC domain | JGI | ISS | |
| UniRef100_B9HZZ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nbs-lrr resistance protein n=1 Tax=Populus trichocarpa RepID=B9HZZ5_POPTR | SoyBase | E_val: 3.00E-98 | ISS |
| UniRef100_I1N4X9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4X9_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma18g51546 not represented in the dataset |
Glyma18g51546 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g280400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g51546.1 sequence type=CDS gene model=Glyma18g51546 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCATGTTCAGAACAATATCATATACGGTTCAAATCATTCGTTGGGCATCGATGTACGTTGTGAATGGAAGCAACAATGTTAATAGTGTTCTGGAAAGTGAGATTAGTAACTTAAATCAATTGGTTTCTGATCTAACTTGCGAGGAAGGAGAAGTTACGGAACAATTACAATGGCTGGAGTCTCGGGGCAGGAAGCGCAAGAGGCAAGTTGATATTTGGTTAAATAAAGTACAAGAACTGAAAAGGAGAGCTATTGTCATTAATGACTTACAAGAACTACAGTTTGGGTTGACTGATCTTTATGGATTGGAAATAAGTCATAAGGAACAGAAGCCTCTGGTGCTCTCAAATGAATTTGTTGGTAAATATTTTGAGAAAAACATAAAGAGGATGTGGAAATTTCTAAAGAATGACCAAGTTTTTGTTATTGGCATACATGGAATGGGCGGAGTGGGGAAAACATTCCTAGCAACTTACATGGAGAATGAGATTAATAGAAAGGGAACTTTCAAGCATGTCTTCTGGATCAATGTTTCCCATGATTTCAGCATTTTCAAGTTGCAACATGACATTGCGGAAACAATAGGGGTTAAACTTAACAGAGATGATGAGAGAACTAGAGCAACAATTTTGTCATTGGCTTTGGAGACAAGAGAAAAAACAGTAATTATTTTGGATGATGTTTGGAAATATATTGATCTGCAAAATGTGGGGATTCCTCTTAAAGTGAATGGCATTAAATTGATTATCACAACTCGTTTGAGACATGTGTGTCTACAGATGGATTGTCTACCAAATAATATAATAAAAATATTCCCCTTTGAAGAAGAAGAAGAAGCTTGGGAGTTATTTTTGCTAAAACTTGGACACCGTGGAACGCCTGCAACACTTCCCCCTCATCTACTTGAGATTGCAAGATCTGTTGTGATGAAATGCAATGGTTTACCACTTGGAATCAGTGTGATGGCTCGGACCATGAAAGGGGAAAATGACATCCGTCGGTGGAGACATGCATTGAATAATCTTGAGAAATCAGAAATGGGAGAAGAGATGAAGGAAGAAGTCCTAACCGTACTAAAACGTAGCTATGACAATTTAATTGAAAAGGTCATGCAAAACTGTTTCTTATTCTGTGCACTGTTACCTAGCATTAGACAAGAGGAGTTGGTTATGATGCTTGTCCAGAGTGGGTTGTTAAATGGAAAGAGGAGTTTGGAGGAAATATTTGATGAGGGGCATGTCATAGTGGATAAACTCATGGACCATTCTTTATTGTTCGATGAAATTGAGGTTTTACGAATGCATGGTCTGTGTTTTTTCAGACACATGAATGCTCTAACACTACTTGATCTATCTGAAAATTATGGGTTAACATCTTTGCCAAAGTCGCTGTCTAAGTTGAGGTCTCTTACTTCTTTAGTGCTCCGTGAATGTCGTCAATTGGAATATATACCTCCACTGGGAGATCTACAAGCATTGTCCAGATTGGACATTTCACGATGTGATTCGATCCTCCGAGTACCGGAAGGCTTGCAAAATCTAATAAACTTGAAATGGCTTGATCTGTTGCAGAATGAGAATTCAACGGTGAAATTGATAGCAGGACGTGTACTGGCCGGTTTGAGCAATATGCAATATCTGGATCTCCGCAGTTGGTCAGGTATAAAAGTAGAAGATGTAAAAGGGATGACTAAGCTTGAATGTTTTGCAGGAAGCTTTCTCGATCAGGATAACTACAACCGTTATGTGCAAGAAATTCAGGACACTGGTTATGGACCTCAAACCTATATTATCTATTTTGGAAAATTTAAGACTGCCACGCCTGGTTTTTGTGAGGATTCTATTTATGTTAAATTCAAGCTTCGAAGGGTATGGTTTGGAGATTGTGATGAATTGCCCTATTTACTGCCAACAGACCTTGCGGAATTATGTGTAGGTCACAATAATCAATGGGAATGCTTATGTGCTGCTCTGTCATCTAATGGTTCTCTTTCATTGGAGGATATTTACATTCATAATTGCACAAATTTGAAGAGCTTGTTCTGTTTATGTTTTTCCTTATGCACTAATATCCAAAGTCTCAAATCTTTGGAACTTGATTTCTTGGAAAGTTTAACTGCCATCTGCAAGGAGCATATTGTTGATTTAACACAATCTTTGTCTTTGAGCGGGGTGTTTTCTCAACTCCAGAGGTTTTCTATCCACGAATGCCATGCAATAGAGATGTTGCTGACAACAGAGTTAGTGCCACAACTTCGAAACCTGGAGTTTATATCCGTATGGAACTGCCAGTCAATGAAGGAGATATTTGCAGTGAGTTACAGCGGTGGTGATGATGATAGTTTCACCATTACACTTCCCAAGTTGAACACTTTGGAATTGGGGTTTCTACCACAATTTGTGCAAAGGAATTTTAGTCTGTGCATCTGA
>Glyma18g51546.1 sequence type=predicted peptide gene model=Glyma18g51546 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIMFRTISYTVQIIRWASMYVVNGSNNVNSVLESEISNLNQLVSDLTCEEGEVTEQLQWLESRGRKRKRQVDIWLNKVQELKRRAIVINDLQELQFGLTDLYGLEISHKEQKPLVLSNEFVGKYFEKNIKRMWKFLKNDQVFVIGIHGMGGVGKTFLATYMENEINRKGTFKHVFWINVSHDFSIFKLQHDIAETIGVKLNRDDERTRATILSLALETREKTVIILDDVWKYIDLQNVGIPLKVNGIKLIITTRLRHVCLQMDCLPNNIIKIFPFEEEEEAWELFLLKLGHRGTPATLPPHLLEIARSVVMKCNGLPLGISVMARTMKGENDIRRWRHALNNLEKSEMGEEMKEEVLTVLKRSYDNLIEKVMQNCFLFCALLPSIRQEELVMMLVQSGLLNGKRSLEEIFDEGHVIVDKLMDHSLLFDEIEVLRMHGLCFFRHMNALTLLDLSENYGLTSLPKSLSKLRSLTSLVLRECRQLEYIPPLGDLQALSRLDISRCDSILRVPEGLQNLINLKWLDLLQNENSTVKLIAGRVLAGLSNMQYLDLRSWSGIKVEDVKGMTKLECFAGSFLDQDNYNRYVQEIQDTGYGPQTYIIYFGKFKTATPGFCEDSIYVKFKLRRVWFGDCDELPYLLPTDLAELCVGHNNQWECLCAALSSNGSLSLEDIYIHNCTNLKSLFCLCFSLCTNIQSLKSLELDFLESLTAICKEHIVDLTQSLSLSGVFSQLQRFSIHECHAIEMLLTTELVPQLRNLEFISVWNCQSMKEIFAVSYSGGDDDSFTITLPKLNTLELGFLPQFVQRNFSLCI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
