Glyma18g51461 - SoyBase

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Report for Sequence Feature Glyma18g51461

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60334962
stop:	60341763
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51461

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67170	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). \| chr1:25127727-25129145 FORWARD LENGTH=359	SoyBase	E_val: 1.00E-99	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G9I822	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Structural maintenance of chromosomes domain-containing protein n=1 Tax=Citrus sinensis RepID=G9I822_CITSI	SoyBase	E_val: 3.00E-39	ISS
UniRef100_UPI000233F3EC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F3EC related cluster n=1 Tax=unknown RepID=UPI000233F3EC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g51461

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g51461 not represented in the dataset	Glyma18g51461 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51461

Paralog	Evidence	Comments
Glyma08g28560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51461 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g279600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g51461

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g51461

Limit To All Plant Sequences

>Glyma18g51461.2   sequence type=transcript   gene model=Glyma18g51461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCTATCATCAAATGATTAATGAATGAATTTAATTTATTCCACTTTTTTTACTAATGAATACTAGAATTTGAATTTGTCAATGTTTTAGGCATTGGACGAAAGTATATTAACAAATTTGCAACTATACATTGCAGGCTGCATGTGACCAACCTGCTTAATTTCATCATCGGGTTAGGGTTTTTGCAGTTCCTTCATTTCGAAACCCTCCTGGATTCACATTCACGATCTCTTTCTATCCTAAATTTCACGCAATGGGGAGCAAAGGCCGCATGCCGCCGCCCCCTCACCTGCGGCGGCCGCACCCGCAGGACCCCGCCGCAATGCCGCACCCGCTCGTGGTGCCGTTTGATTTTCTCCCTCCGCCTCAGGTGATGGAGCAGAAGCTGGCGTCGCAGCACGCGGAGATGCAGCGCCTGTCGACAGAGAACCAGCGCCTGGCCGCGACGCACAGTGTGCTGCGGCAGGAGCTGGCGGCGGCGCAGCATGAGATGCAGATGCTTCACGGGCACGTGGTGGCGCTGAAGGGGGAGCGGGAGCAGCAGATTCGTGCGCAGATGGAGAAGATCGCGAAGATGGAAAGCGAGGCGCAGGGCTCGGAGAGCGTGAAGATGGAGCTGCAGCAGGCGCGTGGGGAGGCACAGAACCTTGTTGTGTCGAGGGATGAACTTGTTTCCAAAGCGCAGCACTTGACTCAGGAGCTTCAGAGGGTCCATGCTGATGCTGTTCAGATTCCTGCTCTTATCTCTGAGTTTGAATGCCTCAGACAGGAGTATCAGCATTGCAGGGCCACTTTTGACTATGAAAAAAACTTATACAATGATCACCTTGAGTCACTTCAGGTGATGGAAAAGAACTATGTTTCCATGAGTAGGGAAGTGGAAAAACTTCGAGCAGAGCTCACAAACACTGCTAATGTAGATCGGAGAAGTAGTGGGCCATATGGTGGCACCTCTGGAACTAATGAGAATGAGGCTTCTGGTCTTCCTGTGGGACAAAATGCATATGAAGATGGTTATTCTGTTATGCAGGGACGAGGTCCCCTCCCAGCAGCTGCTGGCAGCGGCGGCGGCAACGCTACTACAATTACTACTGCCGGAGGTCAACCTGGTCCAGCTCCTGCAGGAACTGGTTATGATGCTCCCATAGGGCCTGGCTATGGTGCATCTACAGGTTCCACTTATGATGCACAAAGGGGTGCTACTTATGACACTCAGAGGTTGACTGGTTCCAATGCATTTAGAGGATCTGCTTATGATTCCAAGAGAGGTTCGGGGTATGATATGCAGAGAGCACCTGCTTATGATGCACCTAGAGCTGCTGGCTATGATGCACAGTCAAGAGGGGTTGCTGGTCCTCATGGACATGCTCGGCCAATGAACAATATGCCTTATGGATCCACAACACCGCCTGCTCGTAGTGGAGGTGGATATGAACCTGCTCGCGGTGTAAACCCTGCTAGGAGATGATGACCTTGAGTCTTGAGAGAAGCCATTGATGGCAATCACAAATCAAATCATTCAAATCTGAATGGTTGAAACTTCTGGTTGTCCTACCATAATTTAATGTGCATAGTGGACGAGGGAAAGAAATGTTTATTAAATGCATAGTCGATAATGAAAAATACATTCTCACTGCGTATGATTGTTGTACATGAGTTTGGTAAAACAGGGTACAATCTACCCCTACCGATTAATTGAGTACTTTTATTTGGGATAACTTAATTTTCTCTCTCTTTTTTTTTTAACCTTGTTTCAAATCTAATTTCTCTTTCAATCTAGTTACATGCG

Coding sequences of Glyma18g51461

Limit To All Plant Sequences

>Glyma18g51461.1   sequence type=CDS   gene model=Glyma18g51461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCAAAGGCCGCATGCCGCCGCCCCCTCACCTGCGGCGGCCGCACCCGCAGGACCCCGCCGCAATGCCGCACCCGCTCGTGGTGCCGTTTGATTTTCTCCCTCCGCCTCAGGTGATGGAGCAGAAGCTGGCGTCGCAGCACGCGGAGATGCAGCGCCTGTCGACAGAGAACCAGCGCCTGGCCGCGACGCACAGTGTGCTGCGGCAGGAGCTGGCGGCGGCGCAGCATGAGATGCAGATGCTTCACGGGCACGTGGTGGCGCTGAAGGGGGAGCGGGAGCAGCAGATTCGTGCGCAGATGGAGAAGATCGCGAAGATGGAAAGCGAGGCGCAGGGCTCGGAGAGCGTGAAGATGGAGCTGCAGCAGGCGCGTGGGGAGGCACAGAACCTTGTTGTGTCGAGGGATGAACTTGTTTCCAAAGCGCAGCACTTGACTCAGGAGCTTCAGAGGGTCCATGCTGATGCTGTTCAGATTCCTGCTCTTATCTCTGAGTTTGAATGCCTCAGACAGGAGTATCAGCATTGCAGGGCCACTTTTGACTATGAAAAAAACTTATACAATGATCACCTTGAGTCACTTCAGGTGATGGAAAAGAACTATGTTTCCATGAGTAGGGAAGTGGAAAAACTTCGAGCAGAGCTCACAAACACTGCTAATGTAGATCGGAGAAGTAGTGGGCCATATGGTGGCACCTCTGGAACTAATGAGAATGAGGCTTCTGGTCTTCCTGTGGGACAAAATGCATATGAAGATGGTTATTCTGTTATGCAGGGACGAGGTCCCCTCCCAGCAGCTGCTGGCAGCGGCGGCGGCAACGCTACTACAATTACTACTGCCGGAGGTCAACCTGGTCCAGCTCCTGCAGGAACTGGTTATGATGCTCCCATAGGGCCTGGCTATGGTGCATCTACAGGTTCCACTTATGATGCACAAAGGGGTGCTACTTATGACACTCAGAGGTTGACTGGTTCCAATGCATTTAGAGGATCTGCTTATGATTCCAAGAGAGGTTCGGGGTATGATATGCAGAGAGCACCTGCTTATGATGCACCTAGAGCTGCTGGCTATGATGCACAGTCAAGAGGGGTTGCTGGTCCTCATGGACATGCTCGGCCAATGAACAATATGCCTTATGGATCCACAACACCGCCTGCTCGTAGTGGAGGTGGATATGAACCTGCTCGCGGTGTAAACCCTGCTAGGAGATGA

>Glyma18g51461.2   sequence type=CDS   gene model=Glyma18g51461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCAAAGGCCGCATGCCGCCGCCCCCTCACCTGCGGCGGCCGCACCCGCAGGACCCCGCCGCAATGCCGCACCCGCTCGTGGTGCCGTTTGATTTTCTCCCTCCGCCTCAGGTGATGGAGCAGAAGCTGGCGTCGCAGCACGCGGAGATGCAGCGCCTGTCGACAGAGAACCAGCGCCTGGCCGCGACGCACAGTGTGCTGCGGCAGGAGCTGGCGGCGGCGCAGCATGAGATGCAGATGCTTCACGGGCACGTGGTGGCGCTGAAGGGGGAGCGGGAGCAGCAGATTCGTGCGCAGATGGAGAAGATCGCGAAGATGGAAAGCGAGGCGCAGGGCTCGGAGAGCGTGAAGATGGAGCTGCAGCAGGCGCGTGGGGAGGCACAGAACCTTGTTGTGTCGAGGGATGAACTTGTTTCCAAAGCGCAGCACTTGACTCAGGAGCTTCAGAGGGTCCATGCTGATGCTGTTCAGATTCCTGCTCTTATCTCTGAGTTTGAATGCCTCAGACAGGAGTATCAGCATTGCAGGGCCACTTTTGACTATGAAAAAAACTTATACAATGATCACCTTGAGTCACTTCAGGTGATGGAAAAGAACTATGTTTCCATGAGTAGGGAAGTGGAAAAACTTCGAGCAGAGCTCACAAACACTGCTAATGTAGATCGGAGAAGTAGTGGGCCATATGGTGGCACCTCTGGAACTAATGAGAATGAGGCTTCTGGTCTTCCTGTGGGACAAAATGCATATGAAGATGGTTATTCTGTTATGCAGGGACGAGGTCCCCTCCCAGCAGCTGCTGGCAGCGGCGGCGGCAACGCTACTACAATTACTACTGCCGGAGGTCAACCTGGTCCAGCTCCTGCAGGAACTGGTTATGATGCTCCCATAGGGCCTGGCTATGGTGCATCTACAGGTTCCACTTATGATGCACAAAGGGGTGCTACTTATGACACTCAGAGGTTGACTGGTTCCAATGCATTTAGAGGATCTGCTTATGATTCCAAGAGAGGTTCGGGGTATGATATGCAGAGAGCACCTGCTTATGATGCACCTAGAGCTGCTGGCTATGATGCACAGTCAAGAGGGGTTGCTGGTCCTCATGGACATGCTCGGCCAATGAACAATATGCCTTATGGATCCACAACACCGCCTGCTCGTAGTGGAGGTGGATATGAACCTGCTCGCGGTGTAAACCCTGCTAGGAGATGA

Predicted protein sequences of Glyma18g51461

Limit To All Plant Sequences

>Glyma18g51461.1   sequence type=predicted peptide   gene model=Glyma18g51461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSKGRMPPPPHLRRPHPQDPAAMPHPLVVPFDFLPPPQVMEQKLASQHAEMQRLSTENQRLAATHSVLRQELAAAQHEMQMLHGHVVALKGEREQQIRAQMEKIAKMESEAQGSESVKMELQQARGEAQNLVVSRDELVSKAQHLTQELQRVHADAVQIPALISEFECLRQEYQHCRATFDYEKNLYNDHLESLQVMEKNYVSMSREVEKLRAELTNTANVDRRSSGPYGGTSGTNENEASGLPVGQNAYEDGYSVMQGRGPLPAAAGSGGGNATTITTAGGQPGPAPAGTGYDAPIGPGYGASTGSTYDAQRGATYDTQRLTGSNAFRGSAYDSKRGSGYDMQRAPAYDAPRAAGYDAQSRGVAGPHGHARPMNNMPYGSTTPPARSGGGYEPARGVNPARR*

>Glyma18g51461.2   sequence type=predicted peptide   gene model=Glyma18g51461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSKGRMPPPPHLRRPHPQDPAAMPHPLVVPFDFLPPPQVMEQKLASQHAEMQRLSTENQRLAATHSVLRQELAAAQHEMQMLHGHVVALKGEREQQIRAQMEKIAKMESEAQGSESVKMELQQARGEAQNLVVSRDELVSKAQHLTQELQRVHADAVQIPALISEFECLRQEYQHCRATFDYEKNLYNDHLESLQVMEKNYVSMSREVEKLRAELTNTANVDRRSSGPYGGTSGTNENEASGLPVGQNAYEDGYSVMQGRGPLPAAAGSGGGNATTITTAGGQPGPAPAGTGYDAPIGPGYGASTGSTYDAQRGATYDTQRLTGSNAFRGSAYDSKRGSGYDMQRAPAYDAPRAAGYDAQSRGVAGPHGHARPMNNMPYGSTTPPARSGGGYEPARGVNPARR*

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