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Report for Sequence Feature Glyma18g51450

Feature Type:gene_model
Chromosome:Gm18
Start:60323232
stop:60333189
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g51450
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G20000AT Annotation by Michelle Graham. TAIR10: CDC27 family protein | chr2:8632324-8636900 REVERSE LENGTH=744 SoyBaseE_val: 0ISS
GO:0006312GO-bp Annotation by Michelle Graham. GO Biological Process: mitotic recombination SoyBaseN/AISS
GO:0007276GO-bp Annotation by Michelle Graham. GO Biological Process: gamete generation SoyBaseN/AISS
GO:0007346GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle SoyBaseN/AISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010048GO-bp Annotation by Michelle Graham. GO Biological Process: vernalization response SoyBaseN/AISS
GO:0010071GO-bp Annotation by Michelle Graham. GO Biological Process: root meristem specification SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0032875GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA endoreduplication SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0048829GO-bp Annotation by Michelle Graham. GO Biological Process: root cap development SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0051302GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell division SoyBaseN/AISS
GO:0051510GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005680GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anaphase-promoting complex SoyBaseN/AISS
GO:0005819GO-cc Annotation by Michelle Graham. GO Cellular Compartment: spindle SoyBaseN/AISS
GO:0009504GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell plate SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1126 KOG DNA-binding cell division cycle control protein JGI ISS
PTHR12558Panther ANAPHASE PROMOTING COMPLEX SUBUNIT JGI ISS
PTHR12558:SF22Panther HBT (HOBBIT), BINDING JGI ISS
PF00515PFAM Tetratricopeptide repeat JGI ISS
UniRef100_I1N4V8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4V8_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q8LGU6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cell division cycle protein 27 homolog B n=1 Tax=Arabidopsis thaliana RepID=CD27B_ARATH SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g51450
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51450
ParalogEvidenceComments
Glyma08g28550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51450 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g279500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g51450
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g51450
>Glyma18g51450.1   sequence type=CDS   gene model=Glyma18g51450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCGATACTCGTGGATTGTGTGCAGAAGAGTCTTCGGCATTTCATGCACGCCAACGCCATCTTCCTCTGCCAGCGTCTCTGCGCCGAGTTCCCCACCGAGACAAATCTCCAATTGTTGGCTGGATGTTACTTGCAGAATAATCAAGCTTATTGTGCATATCATATCTTAAAGGGAGCGCAAATGGCTCAATCTCGATACTTGTTTGCGATATCATGCTTTCAGATGGATCTTCTTAGTGAAGCTGAAGCAGCACTGTGTCCTGTTAATGAGCCTAGTGTAGAGGTTCCAAATGGTGCAGCTGGTCATTATCTGTTAGGGCTGATTTACAGATACACTGACAGAAGGAAAAGTGCCATACATAATTTTAAGCAGGCACTATCAATGGATCCTCTAATGTGGGCTGCATATGAGGAGTTGTGCATATTAGGTGCTGCTGAAGATGCAACTGCAGTTTTTGGTGAAGCAGCTGCTCTTTGTATACAAAAGCAATACCTACATTGCACGACCTCTCCTAAGTTGCATTCATCAGCTGAGGATTGTAATATAGTTGACACTAGACACTCTGTCTCAGAAGACACAAGTCCTAGGCAACTGAAGCTCATGCAGGGCATGAAGGATTTTCCCGGAAATCATCATGGGGCATCTATTTTGGGAGGAACTGCTCAACCAAATAATAGTGGTCTGTCTAACATATCATTTTATAACACACCATCTCCAATGGCAGCACAGTTGTCAGGTGTTGCTCCACCCCCTTTGTGTAGGAATGTGCAGCCTAATGGCCAAAATCTGAGCTCACTTAATGCTGACAGTTCTCCTAAGTCAACAGTGAACTCTACCATTCAAGCCCCTCGAAGAAAGTTCGTGGATGAAGGAAAGTTACGGAAGATTTCTGGAAGATTGTTTTCCGATTCTGGTTCTCGACGTAGTTCAAGACTCTCGAGTGATGCAAGTGTAAATGCAAATGCTAATGCAACAGTTGTATCTGGAAATGGAACTAATAACTCATCTAAGTATCTTGGAGGGTCAAAGCTTAGCACTATGGCATTTCGTTCCATGGCAGTTCGTAAAGGGCAGTCATGGGCCAATGAAAATGCTGATGAAGGGATTCATAATGATGTTCTAGATGATTCTCGCTTAAATGTCACATCAACAACTTCTAGTTCTTCTCCTACCATGGAAGCTAAATCTTATGAGCAAAAAGCAGCAAATTTTCCAATTGGTGGACAAATAGTGAGTGGTTCAAAAGTCATATCTGGTGCTTCAGAAATACTGACCCTTCTTAGAATTTTTGGTGAAGGTTGTAGACTTGCCTACTTGTATAGGTGCCAGGATGCACTGGATACCTATATGAAACTTCCACATAAGCATTACAGTACTGGCTGGGTTCTTTCCCAGGTTGGAAAAGTGTACTTTGAATTGGTTGATTACTTAGAAGCTGAGCAGGCCTTTGGCCTTGCTCATCAGATTACACCTTACAGTTTGGAAGGAATGGATGTATACTCAACAGTCCTTTATCACTTAAAGGAAGATATGAAGTTAAGTTACCTGGCTCAGGAACTGGTTTCAACTGATCGCTTAGCTCCTCAATCTTGGTGTGCCATGGGTAATTGCTATAGCCTGCAAAAGGATCATGAAACTGCACTGAAGAATTTTCAACGAGCTGTTCAACTGAATCCCAGATTTGCATATGCACACACCCTTTGTGGACATGAGTATGTTGCACTAGAAGATTTTGAGAATGGAATCAAATGCTACCAGAGTGCGCTCACAGTTGATGCAAGGCATTATAATGCTTGGTATGGACTTGGAATGGTATATCTTCGCCAAGAAAAGTTTGAGTTCTCTGAACATCATTTTCGGATGGCTTTCCATATCAATCCACGCTCATCTGTTATAATGTCATACCTTGGTACAGCTTTGCATGCTTTAAAGAGAAGCGAGGAAGCACTGATGGTAATGGAGAAGGCTATTTTAGCAGATAAGAAAAATCCCCTTCCAATGTATCAGAAGGCAAATATACTCATGAGCTTGGAAAAGTTTGACGAGGCATTGGAAGTCCTAGAGGAGCTTAAAGAGTATGCTCCTCGTGAAAGTAGTGTCTATGCTTTGATGGGCAGGATCTATAAAAGGCGTAACATGCATGAGAGAGCGATGCTTCATTATGGTATTTCTTTAGATTTGAAACCATCTGCAACAGATGCTGCTGCTATCAAGGCTGCCATTGAGAAATTGCATGTACCAGATGAGATGGAAGACAACTTGTAG
Predicted protein sequences of Glyma18g51450
>Glyma18g51450.1   sequence type=predicted peptide   gene model=Glyma18g51450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAILVDCVQKSLRHFMHANAIFLCQRLCAEFPTETNLQLLAGCYLQNNQAYCAYHILKGAQMAQSRYLFAISCFQMDLLSEAEAALCPVNEPSVEVPNGAAGHYLLGLIYRYTDRRKSAIHNFKQALSMDPLMWAAYEELCILGAAEDATAVFGEAAALCIQKQYLHCTTSPKLHSSAEDCNIVDTRHSVSEDTSPRQLKLMQGMKDFPGNHHGASILGGTAQPNNSGLSNISFYNTPSPMAAQLSGVAPPPLCRNVQPNGQNLSSLNADSSPKSTVNSTIQAPRRKFVDEGKLRKISGRLFSDSGSRRSSRLSSDASVNANANATVVSGNGTNNSSKYLGGSKLSTMAFRSMAVRKGQSWANENADEGIHNDVLDDSRLNVTSTTSSSSPTMEAKSYEQKAANFPIGGQIVSGSKVISGASEILTLLRIFGEGCRLAYLYRCQDALDTYMKLPHKHYSTGWVLSQVGKVYFELVDYLEAEQAFGLAHQITPYSLEGMDVYSTVLYHLKEDMKLSYLAQELVSTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFAYAHTLCGHEYVALEDFENGIKCYQSALTVDARHYNAWYGLGMVYLRQEKFEFSEHHFRMAFHINPRSSVIMSYLGTALHALKRSEEALMVMEKAILADKKNPLPMYQKANILMSLEKFDEALEVLEELKEYAPRESSVYALMGRIYKRRNMHERAMLHYGISLDLKPSATDAAAIKAAIEKLHVPDEMEDNL*






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