Glyma18g51410 - SoyBase

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Report for Sequence Feature Glyma18g51410

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60304452
stop:	60308901
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30890	AT	Annotation by Michelle Graham. TAIR10: Integral membrane HRF1 family protein \| chr1:10994890-10995999 FORWARD LENGTH=269	SoyBase	E_val: 2.00E-159	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3094	KOG	Predicted membrane protein	JGI		ISS
PTHR14083	Panther	YIP1 INTERACTING FACTOR HOMOLOG (YIF1 PROTEIN)	JGI		ISS
PF03878	PFAM	YIF1	JGI		ISS
UniRef100_B9T7B9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein YIF1A, putative n=1 Tax=Ricinus communis RepID=B9T7B9_RICCO	SoyBase	E_val: 8.00E-167	ISS
UniRef100_UPI000233EFAE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EFAE related cluster n=1 Tax=unknown RepID=UPI000233EFAE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g51410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g51410 not represented in the dataset	Glyma18g51410 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51410

Paralog	Evidence	Comments
Glyma08g28500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g51410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g51410

Limit To All Plant Sequences

>Glyma18g51410.2   sequence type=transcript   gene model=Glyma18g51410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGAAAAGATAGTAAGTAGTATTTTGGGCAAGAAGTTGGAGAAGGGTGCAGCAAAACGGTGCGAACAGAGAAAGGGAACAAAGGCTTTGAATTTGATTGCAGTTGAGTTAGCTTTCACTTTCAGTTAAGAATGTATACTAATATTGGTATGCCACCGGGGGTACCTCAGCATCATCCTCAACCTCCAACGAGCTCACAACCTAATCTGTTCGGGAATGCATTCAATTCTGCTGGTTCTGGACTCATTCGAGGTGGATTGGGTGCGTATGGAGAAAAAATATTAGGATCAAGCTCCGAGTATGTCCAAAGCAATATAAGCCGGTATTTCTCTGATCCCCAATACTACTTTCAAGTGAATGACCACTATGTTAAGAACAAATTAAAGGTTGTGTTGTTCCCATTCTTGCACCGGGGTCATTGGACTAGGATTACTGAACCAGTGGGAGGTAGGCTCTCTTATAAACCACCAATTTACGACATAAATGCTCCTGACTTGTACATTCCATTAATGGCATTTGGTACCTATGTTGTTCTTGCTGGCATCTCATTGGGTCTTCGTGGAATGTTTAGTCCTGAAGCTTTGAACTGGTTGTTTATTAAGGGATTGGTTGGTTGGTTTATGCAAACAGCACTGCTTAAAGTCACCTTACTTTCATTGGGCAGTGGGGAAGCACCTCTATTGGACATTATAGCGAACGCCGGGTACACTTTTGCTGGCTTGTGTTTGGCTGTTTGTGGAAGAATGATATGGAGTTACTCCTACTACTTTCTGATGCTGTGGACCTGCATATGTATGGCAGTGTTCTTGGTTAAAACGATGAAGAGAGTTCTTTTTGCGGAAGTCAGGAGTTATGATTCAAGCAAACACCACTATCTCTTGCTCTTCATTGCTTTGGCTCAGTTCCCATTGTTCACATGGCTTGGAAACATTACTGTCAATTGGCTAATATAGAGTGACAGCATTTACACTGTACTTAAAAGCACTTGGTGATTTTTTTTGGTTGTTAACTTTGGAAAGTAGTTATACATGGGCTTTTTCTCTCTCACAGATTGCTTTTATGTGTTGGATATTGAGATGAATAACTATAGGCCTTCTCGCTCTCCAGATATATTATTTTTTAGTACTTTATTTGCATGAACCCAAAGATGTAGATTAGGAAAATATTTCTTTTACAGAATGATTATCCAATTGTAATCGAACTCTAAGATTAAGATTATGGATGGTGTCACTGATGATGAAGGAATATTGTGCAACTGTGATTGAAATTTATCCTTTATGTTTTTGAAGTTTTATTTT

>Glyma18g51410.3   sequence type=transcript   gene model=Glyma18g51410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGAAAAGATAGTAAGTAGTATTTTGGGCAAGAAGTTGGAGAAGGGTGCAGCAAAACGGTGCGAACAGAGAAAGGGAACAAAGGCTTTGAATTTGATTGCAGTTGAGTTAGCTTTCACTTTCAGTGTGAGATCTTCGTCTCTTCTCTTGCTTCCTTCTTCAATTCATCTCCGAACCGCGTTTCTATTTTTGACTCTCTCTCTCTACTCAGTTTCGTCATACTGTGGGAAATTTTGGACAAGGCTGATGCAACCACAATTGCGGTCGCAGAGTCTAAAAACCTTGATGTTGTGGCCAAAATCATGTAAGAATGTATACTAATATTGGTATGCCACCGGGGGTACCTCAGCATCATCCTCAACCTCCAACGAGCTCACAACCTAATCTGTTCGGGAATGCATTCAATTCTGCTGGTTCTGGACTCATTCGAGGTGGATTGGGTGCGTATGGAGAAAAAATATTAGGATCAAGCTCCGAGTATGTCCAAAGCAATATAAGCCGGTATTTCTCTGATCCCCAATACTACTTTCAAGTGAATGACCACTATGTTAAGAACAAATTAAAGGTTGTGTTGTTCCCATTCTTGCACCGGGGTCATTGGACTAGGATTACTGAACCAGTGGGAGGTAGGCTCTCTTATAAACCACCAATTTACGACATAAATGCTCCTGACTTGTACATTCCATTAATGGCATTTGGTACCTATGTTGTTCTTGCTGGCATCTCATTGGGTCTTCGTGGAATGTTTAGTCCTGAAGCTTTGAACTGGTTGTTTATTAAGGGATTGGTTGGTTGGTTTATGCAAACAGCACTGCTTAAAGTCACCTTACTTTCATTGGGCAGTGGGGAAGCACCTCTATTGGACATTATAGCGAACGCCGGGTACACTTTTGCTGGCTTGTGTTTGGCTGTTTGTGGAAGAATGATATGGAGTTACTCCTACTACTTTCTGATGCTGTGGACCTGCATATGTATGGCAGTGTTCTTGGTTAAAACGATGAAGAGAGTTCTTTTTGCGGAAGTCAGGAGTTATGATTCAAGCAAACACCACTATCTCTTGCTCTTCATTGCTTTGGCTCAGTTCCCATTGTTCACATGGCTTGGAAACATTACTGTCAATTGGCTAATATAGAGTGACAGCATTTACACTGTACTTAAAAGCACTTGGTGATTTTTTTTGGTTGTTAACTTTGGAAAGTAGTTATACATGGGCTTTTTCTCTCTCACAGATTGCTTTTATGTGTTGGATATTGAGATGAATAACTATAGGCCTTCTCGCTCTCCAGATATATTATTTTTTAGTACTTTATTTGCATGAACCCAAAGATGTAGATTAGGAAAATATTTCTTTTACAGAATGATTATCCAATTGTAATCGAACTCTAAGATTAAGATTATGGATGGTGTCACTGATGATGAAGGAATATTGTGCAACTGTGATTGAAATTTATCCTTTATGTTTTTGAAGTTTTATTTT

>Glyma18g51410.4   sequence type=transcript   gene model=Glyma18g51410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGAAAAGATAGTAAGTAGTATTTTGGGCAAGAAGTTGGAGAAGGGTGCAGCAAAACGGTGCGAACAGAGAAAGGGAACAAAGGCTTTGAATTTGATTGCAGTTGAGTTAGCTTTCACTTTCAGTGTGAGATCTTCGTCTCTTCTCTTGCTTCCTTCTTCAATTCATCTCCGAACCGCGTTTCTATTTTTGACTCTCTCTCTCTACTCAGTAAGAATGTATACTAATATTGGTATGCCACCGGGGGTACCTCAGCATCATCCTCAACCTCCAACGAGCTCACAACCTAATCTGTTCGGGAATGCATTCAATTCTGCTGGTTCTGGACTCATTCGAGGTGGATTGGGTGCGTATGGAGAAAAAATATTAGGATCAAGCTCCGAGTATGTCCAAAGCAATATAAGCCGGTATTTCTCTGATCCCCAATACTACTTTCAAGTGAATGACCACTATGTTAAGAACAAATTAAAGGTTGTGTTGTTCCCATTCTTGCACCGGGGTCATTGGACTAGGATTACTGAACCAGTGGGAGGTAGGCTCTCTTATAAACCACCAATTTACGACATAAATGCTCCTGACTTGTACATTCCATTAATGGCATTTGGTACCTATGTTGTTCTTGCTGGCATCTCATTGGGTCTTCGTGGAATGTTTAGTCCTGAAGCTTTGAACTGGTTGTTTATTAAGGGATTGGTTGGTTGGTTTATGCAAACAGCACTGCTTAAAGTCACCTTACTTTCATTGGGCAGTGGGGAAGCACCTCTATTGGACATTATAGCGAACGCCGGGTACACTTTTGCTGGCTTGTGTTTGGCTGTTTGTGGAAGAATGATATGGAGTTACTCCTACTACTTTCTGATGCTGTGGACCTGCATATGTATGGCAGTGTTCTTGGTTAAAACGATGAAGAGAGTTCTTTTTGCGGAAGTCAGGAGTTATGATTCAAGCAAACACCACTATCTCTTGCTCTTCATTGCTTTGGCTCAGTTCCCATTGTTCACATGGCTTGGAAACATTACTGTCAATTGGCTAATATAGAGTGACAGCATTTACACTGTACTTAAAAGCACTTGGTGATTTTTTTTGGTTGTTAACTTTGGAAAGTAGTTATACATGGGCTTTTTCTCTCTCACAGATTGCTTTTATGTGTTGGATATTGAGATGAATAACTATAGGCCTTCTCGCTCTCCAGATATATTATTTTTTAGTACTTTATTTGCATGAACCCAAAGATGTAGATTAGGAAAATATTTCTTTTACAGAATGATTATCCAATTGTAATCGAACTCTAAGATTAAGATTATGGATGGTGTCACTGATGATGAAGGAATATTGTGCAACTGTGATTGAAATTTATCCTTTATGTTTTTGAAGTTTTATTTT

Coding sequences of Glyma18g51410

Limit To All Plant Sequences

>Glyma18g51410.1   sequence type=CDS   gene model=Glyma18g51410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATACTAATATTGGTATGCCACCGGGGGTACCTCAGCATCATCCTCAACCTCCAACGAGCTCACAACCTAATCTGTTCGGGAATGCATTCAATTCTGCTGGTTCTGGACTCATTCGAGGTGGATTGGGTGCGTATGGAGAAAAAATATTAGGATCAAGCTCCGAGTATGTCCAAAGCAATATAAGCCGGTATTTCTCTGATCCCCAATACTACTTTCAAGTGAATGACCACTATGTTAAGAACAAATTAAAGGTTGTGTTGTTCCCATTCTTGCACCGGGGTCATTGGACTAGGATTACTGAACCAGTGGGAGGTAGGCTCTCTTATAAACCACCAATTTACGACATAAATGCTCCTGACTTGTACATTCCATTAATGGCATTTGGTACCTATGTTGTTCTTGCTGGCATCTCATTGGGTCTTCGTGGAATGTTTAGTCCTGAAGCTTTGAACTGGTTGTTTATTAAGGGATTGGTTGGTTGGTTTATGCAAACAGCACTGCTTAAAGTCACCTTACTTTCATTGGGCAGTGGGGAAGCACCTCTATTGGACATTATAGCGAACGCCGGGTACACTTTTGCTGGCTTGTGTTTGGCTGTTTGTGGAAGAATGATATGGAGTTACTCCTACTACTTTCTGATGCTGTGGACCTGCATATGTATGGCAGTGTTCTTGGTTAAAACGATGAAGAGAGTTCTTTTTGCGGAAGTCAGGAGTTATGATTCAAGCAAACACCACTATCTCTTGCTCTTCATTGCTTTGGCTCAGTTCCCATTGTTCACATGGCTTGGAAACATTACTGTCAATTGGCTAATATAG

>Glyma18g51410.2   sequence type=CDS   gene model=Glyma18g51410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATACTAATATTGGTATGCCACCGGGGGTACCTCAGCATCATCCTCAACCTCCAACGAGCTCACAACCTAATCTGTTCGGGAATGCATTCAATTCTGCTGGTTCTGGACTCATTCGAGGTGGATTGGGTGCGTATGGAGAAAAAATATTAGGATCAAGCTCCGAGTATGTCCAAAGCAATATAAGCCGGTATTTCTCTGATCCCCAATACTACTTTCAAGTGAATGACCACTATGTTAAGAACAAATTAAAGGTTGTGTTGTTCCCATTCTTGCACCGGGGTCATTGGACTAGGATTACTGAACCAGTGGGAGGTAGGCTCTCTTATAAACCACCAATTTACGACATAAATGCTCCTGACTTGTACATTCCATTAATGGCATTTGGTACCTATGTTGTTCTTGCTGGCATCTCATTGGGTCTTCGTGGAATGTTTAGTCCTGAAGCTTTGAACTGGTTGTTTATTAAGGGATTGGTTGGTTGGTTTATGCAAACAGCACTGCTTAAAGTCACCTTACTTTCATTGGGCAGTGGGGAAGCACCTCTATTGGACATTATAGCGAACGCCGGGTACACTTTTGCTGGCTTGTGTTTGGCTGTTTGTGGAAGAATGATATGGAGTTACTCCTACTACTTTCTGATGCTGTGGACCTGCATATGTATGGCAGTGTTCTTGGTTAAAACGATGAAGAGAGTTCTTTTTGCGGAAGTCAGGAGTTATGATTCAAGCAAACACCACTATCTCTTGCTCTTCATTGCTTTGGCTCAGTTCCCATTGTTCACATGGCTTGGAAACATTACTGTCAATTGGCTAATATAG

>Glyma18g51410.3   sequence type=CDS   gene model=Glyma18g51410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATACTAATATTGGTATGCCACCGGGGGTACCTCAGCATCATCCTCAACCTCCAACGAGCTCACAACCTAATCTGTTCGGGAATGCATTCAATTCTGCTGGTTCTGGACTCATTCGAGGTGGATTGGGTGCGTATGGAGAAAAAATATTAGGATCAAGCTCCGAGTATGTCCAAAGCAATATAAGCCGGTATTTCTCTGATCCCCAATACTACTTTCAAGTGAATGACCACTATGTTAAGAACAAATTAAAGGTTGTGTTGTTCCCATTCTTGCACCGGGGTCATTGGACTAGGATTACTGAACCAGTGGGAGGTAGGCTCTCTTATAAACCACCAATTTACGACATAAATGCTCCTGACTTGTACATTCCATTAATGGCATTTGGTACCTATGTTGTTCTTGCTGGCATCTCATTGGGTCTTCGTGGAATGTTTAGTCCTGAAGCTTTGAACTGGTTGTTTATTAAGGGATTGGTTGGTTGGTTTATGCAAACAGCACTGCTTAAAGTCACCTTACTTTCATTGGGCAGTGGGGAAGCACCTCTATTGGACATTATAGCGAACGCCGGGTACACTTTTGCTGGCTTGTGTTTGGCTGTTTGTGGAAGAATGATATGGAGTTACTCCTACTACTTTCTGATGCTGTGGACCTGCATATGTATGGCAGTGTTCTTGGTTAAAACGATGAAGAGAGTTCTTTTTGCGGAAGTCAGGAGTTATGATTCAAGCAAACACCACTATCTCTTGCTCTTCATTGCTTTGGCTCAGTTCCCATTGTTCACATGGCTTGGAAACATTACTGTCAATTGGCTAATATAG

>Glyma18g51410.4   sequence type=CDS   gene model=Glyma18g51410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATACTAATATTGGTATGCCACCGGGGGTACCTCAGCATCATCCTCAACCTCCAACGAGCTCACAACCTAATCTGTTCGGGAATGCATTCAATTCTGCTGGTTCTGGACTCATTCGAGGTGGATTGGGTGCGTATGGAGAAAAAATATTAGGATCAAGCTCCGAGTATGTCCAAAGCAATATAAGCCGGTATTTCTCTGATCCCCAATACTACTTTCAAGTGAATGACCACTATGTTAAGAACAAATTAAAGGTTGTGTTGTTCCCATTCTTGCACCGGGGTCATTGGACTAGGATTACTGAACCAGTGGGAGGTAGGCTCTCTTATAAACCACCAATTTACGACATAAATGCTCCTGACTTGTACATTCCATTAATGGCATTTGGTACCTATGTTGTTCTTGCTGGCATCTCATTGGGTCTTCGTGGAATGTTTAGTCCTGAAGCTTTGAACTGGTTGTTTATTAAGGGATTGGTTGGTTGGTTTATGCAAACAGCACTGCTTAAAGTCACCTTACTTTCATTGGGCAGTGGGGAAGCACCTCTATTGGACATTATAGCGAACGCCGGGTACACTTTTGCTGGCTTGTGTTTGGCTGTTTGTGGAAGAATGATATGGAGTTACTCCTACTACTTTCTGATGCTGTGGACCTGCATATGTATGGCAGTGTTCTTGGTTAAAACGATGAAGAGAGTTCTTTTTGCGGAAGTCAGGAGTTATGATTCAAGCAAACACCACTATCTCTTGCTCTTCATTGCTTTGGCTCAGTTCCCATTGTTCACATGGCTTGGAAACATTACTGTCAATTGGCTAATATAG

Predicted protein sequences of Glyma18g51410

Limit To All Plant Sequences

>Glyma18g51410.1   sequence type=predicted peptide   gene model=Glyma18g51410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTNIGMPPGVPQHHPQPPTSSQPNLFGNAFNSAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDHYVKNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPLMAFGTYVVLAGISLGLRGMFSPEALNWLFIKGLVGWFMQTALLKVTLLSLGSGEAPLLDIIANAGYTFAGLCLAVCGRMIWSYSYYFLMLWTCICMAVFLVKTMKRVLFAEVRSYDSSKHHYLLLFIALAQFPLFTWLGNITVNWLI*

>Glyma18g51410.2   sequence type=predicted peptide   gene model=Glyma18g51410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTNIGMPPGVPQHHPQPPTSSQPNLFGNAFNSAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDHYVKNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPLMAFGTYVVLAGISLGLRGMFSPEALNWLFIKGLVGWFMQTALLKVTLLSLGSGEAPLLDIIANAGYTFAGLCLAVCGRMIWSYSYYFLMLWTCICMAVFLVKTMKRVLFAEVRSYDSSKHHYLLLFIALAQFPLFTWLGNITVNWLI*

>Glyma18g51410.3   sequence type=predicted peptide   gene model=Glyma18g51410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTNIGMPPGVPQHHPQPPTSSQPNLFGNAFNSAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDHYVKNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPLMAFGTYVVLAGISLGLRGMFSPEALNWLFIKGLVGWFMQTALLKVTLLSLGSGEAPLLDIIANAGYTFAGLCLAVCGRMIWSYSYYFLMLWTCICMAVFLVKTMKRVLFAEVRSYDSSKHHYLLLFIALAQFPLFTWLGNITVNWLI*

>Glyma18g51410.4   sequence type=predicted peptide   gene model=Glyma18g51410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTNIGMPPGVPQHHPQPPTSSQPNLFGNAFNSAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDHYVKNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPLMAFGTYVVLAGISLGLRGMFSPEALNWLFIKGLVGWFMQTALLKVTLLSLGSGEAPLLDIIANAGYTFAGLCLAVCGRMIWSYSYYFLMLWTCICMAVFLVKTMKRVLFAEVRSYDSSKHHYLLLFIALAQFPLFTWLGNITVNWLI*

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