Glyma18g51380 - SoyBase

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Report for Sequence Feature Glyma18g51380

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60291630
stop:	60294654
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02470	AT	Annotation by Michelle Graham. TAIR10: S-adenosylmethionine decarboxylase \| chr3:510223-511323 FORWARD LENGTH=366	SoyBase	E_val: 4.00E-161	ISS
GO:0006596	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine biosynthetic process	SoyBase	N/A	ISS
GO:0006597	GO-bp	Annotation by Michelle Graham. GO Biological Process: spermine biosynthetic process	SoyBase	N/A	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0008295	GO-bp	Annotation by Michelle Graham. GO Biological Process: spermidine biosynthetic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016197	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosomal transport	SoyBase	N/A	ISS
GO:0016458	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing	SoyBase	N/A	ISS
GO:0019079	GO-bp	Annotation by Michelle Graham. GO Biological Process: viral genome replication	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0004014	GO-mf	Annotation by Michelle Graham. GO Molecular Function: adenosylmethionine decarboxylase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0788	KOG	S-adenosylmethionine decarboxylase	JGI		ISS
PTHR11570	Panther	S-ADENOSYLMETHIONINE DECARBOXYLASE	JGI		ISS
PF01536	PFAM	Adenosylmethionine decarboxylase	JGI		ISS
UniRef100_B2KNJ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine decarboxylase (Fragment) n=1 Tax=Phaseolus vulgaris RepID=B2KNJ0_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EE59	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EE59 related cluster n=1 Tax=unknown RepID=UPI000233EE59	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g51380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51380

Paralog	Evidence	Comments
Glyma08g28430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g278800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g51380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g51380

Limit To All Plant Sequences

>Glyma18g51380.3   sequence type=transcript   gene model=Glyma18g51380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGGGCGTTATCGTAATTACAAAGTTTACCTAGGCGCCTATATAATCGTCGCCCTCTCCTCCCCATAACAACCCCACGAATTTGCAAATCTCAAACGAAGCCCTTTTCTCTCTCTCTTCAATTTCACCCTTTTAGCATTTGTACATTCCTTTCCCTTCCTTGAATCGTTCTTAATTGCGAGAGGGGATATCGGAGAAGTTGATTGGCCTCCCATTAATTGCAGGTCTGAATGATCTGATGGAGTCTAAAGTTGGGAAGAAGAAGTCGTCTAGTAGTAAGTCCCTTTTGTACGAAGCTCCTCTCGATTACACCATTGAAGACGTTCGACCACACGGTGGAATTAAGAAGTTCAGATCTGCTGCTTACTCCAACTGCATCCGCAAGCCATCCTGAGATTCCCTAGGTTGTGTGACGACATAGCCCCCGTAGTCTTGCATCTGCTATATTATTCTAGTCTCTTCTTTTCCCTTTTCTTGTTCTCTTCCTTGCCCTTTTGTTCTCTCTACCTATACAGCAAGACTTTGTTTCTTTTTGAGTCAAGATGGCTGGCTCAGCTATTGGTTTCGAAGGCTACGAAAAAAGACTTGAGATATCATTTTTTGAAAATGGTGTGTTTGCTGACCCCGGAGGATTAGGCCTCCGAGCATTGTCCAAAGACCAATTGGACGAGATTCTTAAACCAGCAGAGTGCACTATTGTTGCATCACTTTCAAATGATTATGTTGACTCTTATGTTCTGTCAGAGTCAAGCCTGTTCGTCTATCCTTATAAAATTATCATCAAAACTTGTGGGACTACCAAATTGCTTCTGTCCATCCCTGTCATTCTCAAGTTGGCTGATGCTCTTGACATAGCTGTGAAATCTGTGAGGTACACTCGTGGAAGCTTCATTTTCCCTGGGGCACAGTCTTTTCCTCACCGCAGTTTTTCCGAGGAGGTTTCTGTTCTTGACAGCTATTTCAGCAACCTTGGTTCTGGTAGCAAAGCATATGTTATGGGTGACCCTTCAAAGTCACAGATTTGGCACATCTACTCTGCAAGTGCACAGACCAAAGGATCATCTGAAGCTGTCTATGGCCTAGAGATGTGCATGACCGGTTTAGACAAGGAAAGTGCTTCTGTGTTTTTCAAGGAGAATACATCTTCAGCAGCTTCAATGACCGAAAATTCTGGAATTAGGAAGATCCTTCCACAGTCTGATATATCTGATTTTGAATTTGACCCTTGCGGATATTCAATGAATGGAATAGAAGGGAGTGCTATATCCACCATCCATGTCACTCCTGAAGATGGTTTCAGTTACGCAAGTTTTGAAGCTGTTGGTTATGACTTTAATGACATGGCTCTAGGTGAACTTGTGGAAAGGATTTTAGCTTGCTTTTGTCCAGCAGAGTTTTCTGTTGCTTTGCACATTGACATGCATGGTGAGAAACTTAATAAATTTCCCTTAGACATCAAAGGATACTACTGTGGTGAGAGGAGCACTGAAGAGCTTGGAGTAGGTGGTGCAGTTGTGTACCAAACATTTGTTCAAGGCTGCGATGGTAGTGCATCTCCTAGGTCTATTCTGAAATGCTGCTGGAGTGAGGACGAGAACGAAGATGAAGTGAGGGAGATATAAGTACTTCTGGTTTTTATGTTCTGTTGTTATTTATCTTTACTGTCGAGTGTGTTATTACCTAAATAAATAAATATGGGGGTTATGATGTGAGTGAAGCAATGAACTTGTTGTGTAGCTTCACTTCACTTGTGTGATTATGCAGATGTTATTTCGTTTCTACTGCCAACTCATATGGGAAACTCTTATATGAGGCTGTTGCACTTGTATTTCATTTTATATAAATAAATATGAATATAATTATATTATAATGTAAAAGTTATTAGTGACAAATGCTGGCGGTGATATTTCTTAAGCCAATGGTGCCTGCTGTTTTTAGGA

>Glyma18g51380.4   sequence type=transcript   gene model=Glyma18g51380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGGGCGTTATCGTAATTACAAAGTTTACCTAGGCGCCTATATAATCGTCGCCCTCTCCTCCCCATAACAACCCCACGAATTTGCAAATCTCAAACGAAGCCCTTTTCTCTCTCTCTTCAATTTCACCCTTTTAGCATTTGTACATTCCTTTCCCTTCCTTGAATCGTTGTAAGTGCATTGCGATTTTGCCCTTTTCTTTATTTCAATTTTTTGCTCTGTTTCTGTTATTCATTTGGGTTAATTTCGATTCGAAGCTTAATTGCGAGAGGGGATATCGGAGAAGTTGATTGGCCTCCCATTAATTGCAGGTCTGAATGATCTGATGGAGTCTAAAGTTGGGAAGAAGAAGTCGTCTAGTAGTAAGTCCCTTTTGTACGAAGCTCCTCTCGATTACACCATTGAAGACGTTCGACCACACGGTGGAATTAAGAAGTTCAGATCTGCTGCTTACTCCAACTGCATCCGCAAGCCATCCTGAGATTCCCTAGGTTGTGTGACGACATAGCCCCCGTAGTCTTGCATCTGCTATATTATTCTAGTCTCTTCTTTTCCCTTTTCTTGTTCTCTTCCTTGCCCTTTTGTTCTCTCTACCTATACAGCAAGACTTTGTTTCTTTTTGAGTCAAGATGGCTGGCTCAGCTATTGGTTTCGAAGGCTACGAAAAAAGACTTGAGATATCATTTTTTGAAAATGGTGTGTTTGCTGACCCCGGAGGATTAGGCCTCCGAGCATTGTCCAAAGACCAATTGGACGAGATTCTTAAACCAGCAGAGTGCACTATTGTTGCATCACTTTCAAATGATTATGTTGACTCTTATGTTCTGTCAGAGTCAAGCCTGTTCGTCTATCCTTATAAAATTATCATCAAAACTTGTGGGACTACCAAATTGCTTCTGTCCATCCCTGTCATTCTCAAGTTGGCTGATGCTCTTGACATAGCTGTGAAATCTGTGAGGTACACTCGTGGAAGCTTCATTTTCCCTGGGGCACAGTCTTTTCCTCACCGCAGTTTTTCCGAGGAGGTTTCTGTTCTTGACAGCTATTTCAGCAACCTTGGTTCTGGTAGCAAAGCATATGTTATGGGTGACCCTTCAAAGTCACAGATTTGGCACATCTACTCTGCAAGTGCACAGACCAAAGGATCATCTGAAGCTGTCTATGGCCTAGAGATGTGCATGACCGGTTTAGACAAGGAAAGTGCTTCTGTGTTTTTCAAGGAGAATACATCTTCAGCAGCTTCAATGACCGAAAATTCTGGAATTAGGAAGATCCTTCCACAGTCTGATATATCTGATTTTGAATTTGACCCTTGCGGATATTCAATGAATGGAATAGAAGGGAGTGCTATATCCACCATCCATGTCACTCCTGAAGATGGTTTCAGTTACGCAAGTTTTGAAGCTGTTGGTTATGACTTTAATGACATGGCTCTAGGTGAACTTGTGGAAAGGATTTTAGCTTGCTTTTGTCCAGCAGAGTTTTCTGTTGCTTTGCACATTGACATGCATGGTGAGAAACTTAATAAATTTCCCTTAGACATCAAAGGATACTACTGTGGTGAGAGGAGCACTGAAGAGCTTGGAGTAGGTGGTGCAGTTGTGTACCAAACATTTGTTCAAGGCTGCGATGGTAGTGCATCTCCTAGGTCTATTCTGAAATGCTGCTGGAGTGAGGACGAGAACGAAGATGAAGTGAGGGAGATATAAGTACTTCTGGTTTTTATGTTCTGTTGTTATTTATCTTTACTGTCGAGTGTGTTATTACCTAAATAAATAAATATGGGGGTTATGATGTGAGTGAAGCAATGAACTTGTTGTGTAGCTTCACTTCACTTGTGTGATTATGCAGATGTTATTTCGTTTCTACTGCCAACTCATATGGGAAACTCTTATATGAGGCTGTTGCACTTGTATTTCATTTTATATAAATAAATATGAATATAATTATATTATAATGTAAAAGTTATTAGTGACAAATGCTGGCGGTGATATTTCTTAAGCCAATGGTGCCTGCTGTTTTTAGGA

Coding sequences of Glyma18g51380

Limit To All Plant Sequences

>Glyma18g51380.2   sequence type=CDS   gene model=Glyma18g51380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGCTCAGCTATTGGTTTCGAAGGCTACGAAAAAAGACTTGAGATATCATTTTTTGAAAATGGTGTGTTTGCTGACCCCGGAGGATTAGGCCTCCGAGCATTGTCCAAAGACCAATTGGACGAGATTCTTAAACCAGCAGAGTGCACTATTGTTGCATCACTTTCAAATGATTATGTTGACTCTTATGTTCTGTCAGAGTCAAGCCTGTTCGTCTATCCTTATAAAATTATCATCAAAACTTGTGGGACTACCAAATTGCTTCTGTCCATCCCTGTCATTCTCAAGTTGGCTGATGCTCTTGACATAGCTGTGAAATCTGTGAGGTACACTCGTGGAAGCTTCATTTTCCCTGGGGCACAGTCTTTTCCTCACCGCAGTTTTTCCGAGGAGGTTTCTGTTCTTGACAGCTATTTCAGCAACCTTGGTTCTGGTAGCAAAGCATATGTTATGGGTGACCCTTCAAAGTCACAGATTTGGCACATCTACTCTGCAAGTGCACAGACCAAAGGATCATCTGAAGCTGTCTATGGCCTAGAGATGTGCATGACCGGTTTAGACAAGGAAAGTGCTTCTGTGTTTTTCAAGGAGAATACATCTTCAGCAGCTTCAATGACCGAAAATTCTGGAATTAGGAAGATCCTTCCACAGTCTGATATATCTGATTTTGAATTTGACCCTTGCGGATATTCAATGAATGGAATAGAAGGGAGTGCTATATCCACCATCCATGTCACTCCTGAAGATGGTTTCAGTTACGCAAGTTTTGAAGCTGTTGGTTATGACTTTAATGACATGGCTCTAGGTGAACTTGTGGAAAGGATTTTAGCTTGCTTTTGTCCAGCAGAGTTTTCTGTTGCTTTGCACATTGACATGCATGGTGAGAAACTTAATAAATTTCCCTTAGACATCAAAGGATACTACTGTGGTGAGAGGAGCACTGAAGAGCTTGGAGTAGGTGGTGCAGTTGTGTACCAAACATTTGTTCAAGGCTGCGATGGTAGTGCATCTCCTAGGTCTATTCTGAAATGCTGCTGGAGTGAGGACGAGAACGAAGATGAAGTGAGGGAGATATAA

>Glyma18g51380.3   sequence type=CDS   gene model=Glyma18g51380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGCTCAGCTATTGGTTTCGAAGGCTACGAAAAAAGACTTGAGATATCATTTTTTGAAAATGGTGTGTTTGCTGACCCCGGAGGATTAGGCCTCCGAGCATTGTCCAAAGACCAATTGGACGAGATTCTTAAACCAGCAGAGTGCACTATTGTTGCATCACTTTCAAATGATTATGTTGACTCTTATGTTCTGTCAGAGTCAAGCCTGTTCGTCTATCCTTATAAAATTATCATCAAAACTTGTGGGACTACCAAATTGCTTCTGTCCATCCCTGTCATTCTCAAGTTGGCTGATGCTCTTGACATAGCTGTGAAATCTGTGAGGTACACTCGTGGAAGCTTCATTTTCCCTGGGGCACAGTCTTTTCCTCACCGCAGTTTTTCCGAGGAGGTTTCTGTTCTTGACAGCTATTTCAGCAACCTTGGTTCTGGTAGCAAAGCATATGTTATGGGTGACCCTTCAAAGTCACAGATTTGGCACATCTACTCTGCAAGTGCACAGACCAAAGGATCATCTGAAGCTGTCTATGGCCTAGAGATGTGCATGACCGGTTTAGACAAGGAAAGTGCTTCTGTGTTTTTCAAGGAGAATACATCTTCAGCAGCTTCAATGACCGAAAATTCTGGAATTAGGAAGATCCTTCCACAGTCTGATATATCTGATTTTGAATTTGACCCTTGCGGATATTCAATGAATGGAATAGAAGGGAGTGCTATATCCACCATCCATGTCACTCCTGAAGATGGTTTCAGTTACGCAAGTTTTGAAGCTGTTGGTTATGACTTTAATGACATGGCTCTAGGTGAACTTGTGGAAAGGATTTTAGCTTGCTTTTGTCCAGCAGAGTTTTCTGTTGCTTTGCACATTGACATGCATGGTGAGAAACTTAATAAATTTCCCTTAGACATCAAAGGATACTACTGTGGTGAGAGGAGCACTGAAGAGCTTGGAGTAGGTGGTGCAGTTGTGTACCAAACATTTGTTCAAGGCTGCGATGGTAGTGCATCTCCTAGGTCTATTCTGAAATGCTGCTGGAGTGAGGACGAGAACGAAGATGAAGTGAGGGAGATATAA

>Glyma18g51380.4   sequence type=CDS   gene model=Glyma18g51380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGCTCAGCTATTGGTTTCGAAGGCTACGAAAAAAGACTTGAGATATCATTTTTTGAAAATGGTGTGTTTGCTGACCCCGGAGGATTAGGCCTCCGAGCATTGTCCAAAGACCAATTGGACGAGATTCTTAAACCAGCAGAGTGCACTATTGTTGCATCACTTTCAAATGATTATGTTGACTCTTATGTTCTGTCAGAGTCAAGCCTGTTCGTCTATCCTTATAAAATTATCATCAAAACTTGTGGGACTACCAAATTGCTTCTGTCCATCCCTGTCATTCTCAAGTTGGCTGATGCTCTTGACATAGCTGTGAAATCTGTGAGGTACACTCGTGGAAGCTTCATTTTCCCTGGGGCACAGTCTTTTCCTCACCGCAGTTTTTCCGAGGAGGTTTCTGTTCTTGACAGCTATTTCAGCAACCTTGGTTCTGGTAGCAAAGCATATGTTATGGGTGACCCTTCAAAGTCACAGATTTGGCACATCTACTCTGCAAGTGCACAGACCAAAGGATCATCTGAAGCTGTCTATGGCCTAGAGATGTGCATGACCGGTTTAGACAAGGAAAGTGCTTCTGTGTTTTTCAAGGAGAATACATCTTCAGCAGCTTCAATGACCGAAAATTCTGGAATTAGGAAGATCCTTCCACAGTCTGATATATCTGATTTTGAATTTGACCCTTGCGGATATTCAATGAATGGAATAGAAGGGAGTGCTATATCCACCATCCATGTCACTCCTGAAGATGGTTTCAGTTACGCAAGTTTTGAAGCTGTTGGTTATGACTTTAATGACATGGCTCTAGGTGAACTTGTGGAAAGGATTTTAGCTTGCTTTTGTCCAGCAGAGTTTTCTGTTGCTTTGCACATTGACATGCATGGTGAGAAACTTAATAAATTTCCCTTAGACATCAAAGGATACTACTGTGGTGAGAGGAGCACTGAAGAGCTTGGAGTAGGTGGTGCAGTTGTGTACCAAACATTTGTTCAAGGCTGCGATGGTAGTGCATCTCCTAGGTCTATTCTGAAATGCTGCTGGAGTGAGGACGAGAACGAAGATGAAGTGAGGGAGATATAA

Predicted protein sequences of Glyma18g51380

Limit To All Plant Sequences

>Glyma18g51380.2   sequence type=predicted peptide   gene model=Glyma18g51380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGSAIGFEGYEKRLEISFFENGVFADPGGLGLRALSKDQLDEILKPAECTIVASLSNDYVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPVILKLADALDIAVKSVRYTRGSFIFPGAQSFPHRSFSEEVSVLDSYFSNLGSGSKAYVMGDPSKSQIWHIYSASAQTKGSSEAVYGLEMCMTGLDKESASVFFKENTSSAASMTENSGIRKILPQSDISDFEFDPCGYSMNGIEGSAISTIHVTPEDGFSYASFEAVGYDFNDMALGELVERILACFCPAEFSVALHIDMHGEKLNKFPLDIKGYYCGERSTEELGVGGAVVYQTFVQGCDGSASPRSILKCCWSEDENEDEVREI*

>Glyma18g51380.3   sequence type=predicted peptide   gene model=Glyma18g51380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGSAIGFEGYEKRLEISFFENGVFADPGGLGLRALSKDQLDEILKPAECTIVASLSNDYVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPVILKLADALDIAVKSVRYTRGSFIFPGAQSFPHRSFSEEVSVLDSYFSNLGSGSKAYVMGDPSKSQIWHIYSASAQTKGSSEAVYGLEMCMTGLDKESASVFFKENTSSAASMTENSGIRKILPQSDISDFEFDPCGYSMNGIEGSAISTIHVTPEDGFSYASFEAVGYDFNDMALGELVERILACFCPAEFSVALHIDMHGEKLNKFPLDIKGYYCGERSTEELGVGGAVVYQTFVQGCDGSASPRSILKCCWSEDENEDEVREI*

>Glyma18g51380.4   sequence type=predicted peptide   gene model=Glyma18g51380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGSAIGFEGYEKRLEISFFENGVFADPGGLGLRALSKDQLDEILKPAECTIVASLSNDYVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPVILKLADALDIAVKSVRYTRGSFIFPGAQSFPHRSFSEEVSVLDSYFSNLGSGSKAYVMGDPSKSQIWHIYSASAQTKGSSEAVYGLEMCMTGLDKESASVFFKENTSSAASMTENSGIRKILPQSDISDFEFDPCGYSMNGIEGSAISTIHVTPEDGFSYASFEAVGYDFNDMALGELVERILACFCPAEFSVALHIDMHGEKLNKFPLDIKGYYCGERSTEELGVGGAVVYQTFVQGCDGSASPRSILKCCWSEDENEDEVREI*

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