Glyma18g51345 - SoyBase

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Report for Sequence Feature Glyma18g51345

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60279031
stop:	60282893
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51345

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02490	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr3:513607-515604 FORWARD LENGTH=665	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF20	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D7KZH6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KZH6_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1N4U9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4U9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g51345

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g51345 not represented in the dataset	Glyma18g51345 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51345

Paralog	Evidence	Comments
Glyma08g28400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51345 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g278400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g51345

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g51345

Limit To All Plant Sequences

>Glyma18g51345.2   sequence type=transcript   gene model=Glyma18g51345   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGCCCAAATCAAAACCCAAAACTACAATAAGAAAAAAAAAACCTTCATCTCCCTAAAACCCTAGTTACTGTTTCTATACCTTTCTTTCTCACACTCAAAATCTCGATTCATTTCGTGTCAAATCCCAATCCCTCGATTCGTTCGTGTTGCAGCAATGAGGCATCAATGGCGTCTTCTCCACCACCTTCTTCGCTCTCGCCCCCGCATTACCTATCACTCTCAGGTACTTCCCTATTCCTCTTCCATCCCTCGTCGTTTCGCCGCCAATTCCACGTTCCCGTTAAACCCTAGTTTCCGTCGTTTTTCCTCCGAACCCGTTCTCGCACAAGCCGACACTGACCACCTCCTCGTTGCCGACATTTTCTCCAAGCCTGTGGATTCCGAGGACTTCAAAACCCTCCTCGGGTCGAATCGCGTCTCCATTACCCACGACGCGGTCCTCGCGGTTCTGGGGAAGTTCGATTCCAACGTCGACGCGGCGCGGAGGTTCTTCCAATGGGTTTCGGAGAACCACCCCGAGAGGTTGAGCTCCAAGTGCTACAACTCGATGCTGTGCGTTTTGGGGACCAATGGTTTCGTTGACGAGTTTTGGGACTTGGTTAATGTGATGAAGAAAAAAGGGTATGGAGTTTCCAAGGGTGTGAAGGAGAGAGTGTTGGAGTCTTTTGAAAAAGGTGGAATGGATGGTGATGTGGCGAAGTTGAAGGGTTTGTTTGATAACTCCAAAGAGAAGAATATTGCTATAGTGTGTAGGATTGTGAGGAACAATGTGTGGGGTGATGATGTTGAGAAGCAGATTGAGGACTTGAATGTTGGGTTCTCCAGCGAAGTCGTTAAGACAGTTTTGGAGAGTTTGGTTTTGGAACCTGTGAAGGCGTTGATATTTTTCCGGTGGTTGGAGGAGAGTGGTCTGTTTAAGCATGATGGGAGAACTTACAATGCGATGGCGAGGGTGTTGGGGAGGGAGGATTTGATTGATCGGTTTTGGAAGCTTGTTGGTGACATGAGGAGTGCCGGGTTTGAGATGGAAGCTGAGACGTTTGTTAAGGTATTAGGGCGGTTTTGTAAGAGGAGAATGGTGAAGGATGCTGTTGAGCTTTACGAGTTTGCTATGGCCGGTGCAAATAAGCCTACGGTACAGTGCTGTGTCTTTCTGTTGAGGAAGGTTGCTGCTGGGAAAGAGTTGGATACGGATTTGTTTTCAAGGGTTTTGAAGGTTTTTACTGGAAATGGGAATGTGTTGACTGATTCTGTGGCTAATGCTGTGCTGAAGTCTTTGACCAGTGTTGGTAGGACTGGGGAGTGGAACAAGGTTTTGAAAGAAATGGAAGATTGTGGGTTTGTTGCTGGTGGTAGTTTACAGAGTAAAATTGCCTATAGACTTGGTGCAGCGGGTAACAAGGAACAAGCTCATGAGTTCATGAATAGAATTGAGGTGTCTGGATCCAATCCATATCGCAAGACATGGGAATCTTTAATTCAGGGGTACTGTGTAGCTGGGAACCTTGATAAAGCTTTTGAATCTTTTAAAGAGATTGTTGAGAAAGAGGGGGTTGCTTCTGCAGGCTATTCTTTTAATGTGTTAATGAATTCATATTGCCAAATGAATAGGGCGGTAGATGCAAGCAAGATTCTTTGCCGACTGGTGAATGAGAAACAGTTAAAGCCCTGGCATTCTACTTACAAGCTACTGGTAACCAAGTTACTGGTTCAAGGAGGATTTACAGATGCATTGAATATTTTGGGATTAATGAGAACCCACGGATTTCCACCTTTTACTGATCCATTTATTGAACACTTGTCAAAGAGTGGAAGTGGCGATGATGCTGTACTGTTTCTCAAGGCAATGACATCAAAGAGGTTTCCATCTACATCCATGTTTCTCCGTATGTTTGAAGCCTTTTTCAAGCACAGAAGGCATGAAGAAGCACAAAATTTCCTCTCGAAATGTCCACGCTACATCCGCAATCATGCTGATGTCTTGAATCTCTTTTGTTCCTTGAACTCTAAAGAAGCTGCTTCTTCTAGTATGTTGGCTGCTTAAGCTTTCAGAATATGGCTCATGTTGTACTCTTCAGAAGTATCTGCAATTGCATTTGTTCAGAAATTTTGTTACAATAATTGAGATGGTTTCCCGGGTCCTCATGTTAAAGTTTTATGTTGGGCTTCACAAAAATAGGCCCCATTGGTAGATCCCTCAAAATCAGGTGGATGTAATCCGGCTCGTTGGGGACGGGGTACATAAAAGCACATTCTTGAGGAGGAAGCAAGAATTTTTCCCTTTTATTGAATTTGCCGATATGGAATGACACTGAAACAACTCATACAAGTAATAGAAAGGTCATATCATATGCCAATTTGCATTAAAGTGGAAACTATTTGAGGTGGAGTCGATTTTTAGTTTATAAAATTTTATTTTTCTTTTTTAATTTGAGTTGTAAAATCATTTATCAATGTTTTATGATTACCAACATTTTCAATTAATATATTT

Coding sequences of Glyma18g51345

Limit To All Plant Sequences

>Glyma18g51345.1   sequence type=CDS   gene model=Glyma18g51345   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGCATCAATGGCGTCTTCTCCACCACCTTCTTCGCTCTCGCCCCCGCATTACCTATCACTCTCAGGTACTTCCCTATTCCTCTTCCATCCCTCGTCGTTTCGCCGCCAATTCCACGTTCCCGTTAAACCCTAGTTTCCGTCGTTTTTCCTCCGAACCCGTTCTCGCACAAGCCGACACTGACCACCTCCTCGTTGCCGACATTTTCTCCAAGCCTGTGGATTCCGAGGACTTCAAAACCCTCCTCGGGTCGAATCGCGTCTCCATTACCCACGACGCGGTCCTCGCGGTTCTGGGGAAGTTCGATTCCAACGTCGACGCGGCGCGGAGGTTCTTCCAATGGGTTTCGGAGAACCACCCCGAGAGGTTGAGCTCCAAGTGCTACAACTCGATGCTGTGCGTTTTGGGGACCAATGGTTTCGTTGACGAGTTTTGGGACTTGGTTAATGTGATGAAGAAAAAAGGGTATGGAGTTTCCAAGGGTGTGAAGGAGAGAGTGTTGGAGTCTTTTGAAAAAGGTGGAATGGATGGTGATGTGGCGAAGTTGAAGGGTTTGTTTGATAACTCCAAAGAGAAGAATATTGCTATAGTGTGTAGGATTGTGAGGAACAATGTGTGGGGTGATGATGTTGAGAAGCAGATTGAGGACTTGAATGTTGGGTTCTCCAGCGAAGTCGTTAAGACAGTTTTGGAGAGTTTGGTTTTGGAACCTGTGAAGGCGTTGATATTTTTCCGGTGGTTGGAGGAGAGTGGTCTGTTTAAGCATGATGGGAGAACTTACAATGCGATGGCGAGGGTGTTGGGGAGGGAGGATTTGATTGATCGGTTTTGGAAGCTTGTTGGTGACATGAGGAGTGCCGGGTTTGAGATGGAAGCTGAGACGTTTGTTAAGGTATTAGGGCGGTTTTGTAAGAGGAGAATGGTGAAGGATGCTGTTGAGCTTTACGAGTTTGCTATGGCCGGTGCAAATAAGCCTACGGTACAGTGCTGTGTCTTTCTGTTGAGGAAGGTTGCTGCTGGGAAAGAGTTGGATACGGATTTGTTTTCAAGGGTTTTGAAGGTTTTTACTGGAAATGGGAATGTGTTGACTGATTCTGTGGCTAATGCTGTGCTGAAGTCTTTGACCAGTGTTGGTAGGACTGGGGAGTGGAACAAGGTTTTGAAAGAAATGGAAGATTGTGGGTTTGTTGCTGGTGGTAGTTTACAGAGTAAAATTGCCTATAGACTTGGTGCAGCGGGTAACAAGGAACAAGCTCATGAGTTCATGAATAGAATTGAGGTGTCTGGATCCAATCCATATCGCAAGACATGGGAATCTTTAATTCAGGGGTACTGTGTAGCTGGGAACCTTGATAAAGCTTTTGAATCTTTTAAAGAGATTGTTGAGAAAGAGGGGGTTGCTTCTGCAGGCTATTCTTTTAATGTGTTAATGAATTCATATTGCCAAATGAATAGGGCGGTAGATGCAAGCAAGATTCTTTGCCGACTGGTGAATGAGAAACAGTTAAAGCCCTGGCATTCTACTTACAAGCTACTGGTAACCAAGTTACTGGTTCAAGGAGGATTTACAGATGCATTGAATATTTTGGGATTAATGAGAACCCACGGATTTCCACCTTTTACTGATCCATTTATTGAACACTTGTCAAAGAGTGGAAGTGGCGATGATGCTGTACTGTTTCTCAAGGCAATGACATCAAAGAGGTTTCCATCTACATCCATGTTTCTCCGTATGTTTGAAGCCTTTTTCAAGCACAGAAGGCATGAAGAAGCACAAAATTTCCTCTCGAAATGTCCACGCTACATCCGCAATCATGCTGATGTCTTGAATCTCTTTTGTTCCTTGAACTCTAAAGAAGCTGCTTCTTCTAGTATGTTGGCTGCTTAA

>Glyma18g51345.2   sequence type=CDS   gene model=Glyma18g51345   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGCATCAATGGCGTCTTCTCCACCACCTTCTTCGCTCTCGCCCCCGCATTACCTATCACTCTCAGGTACTTCCCTATTCCTCTTCCATCCCTCGTCGTTTCGCCGCCAATTCCACGTTCCCGTTAAACCCTAGTTTCCGTCGTTTTTCCTCCGAACCCGTTCTCGCACAAGCCGACACTGACCACCTCCTCGTTGCCGACATTTTCTCCAAGCCTGTGGATTCCGAGGACTTCAAAACCCTCCTCGGGTCGAATCGCGTCTCCATTACCCACGACGCGGTCCTCGCGGTTCTGGGGAAGTTCGATTCCAACGTCGACGCGGCGCGGAGGTTCTTCCAATGGGTTTCGGAGAACCACCCCGAGAGGTTGAGCTCCAAGTGCTACAACTCGATGCTGTGCGTTTTGGGGACCAATGGTTTCGTTGACGAGTTTTGGGACTTGGTTAATGTGATGAAGAAAAAAGGGTATGGAGTTTCCAAGGGTGTGAAGGAGAGAGTGTTGGAGTCTTTTGAAAAAGGTGGAATGGATGGTGATGTGGCGAAGTTGAAGGGTTTGTTTGATAACTCCAAAGAGAAGAATATTGCTATAGTGTGTAGGATTGTGAGGAACAATGTGTGGGGTGATGATGTTGAGAAGCAGATTGAGGACTTGAATGTTGGGTTCTCCAGCGAAGTCGTTAAGACAGTTTTGGAGAGTTTGGTTTTGGAACCTGTGAAGGCGTTGATATTTTTCCGGTGGTTGGAGGAGAGTGGTCTGTTTAAGCATGATGGGAGAACTTACAATGCGATGGCGAGGGTGTTGGGGAGGGAGGATTTGATTGATCGGTTTTGGAAGCTTGTTGGTGACATGAGGAGTGCCGGGTTTGAGATGGAAGCTGAGACGTTTGTTAAGGTATTAGGGCGGTTTTGTAAGAGGAGAATGGTGAAGGATGCTGTTGAGCTTTACGAGTTTGCTATGGCCGGTGCAAATAAGCCTACGGTACAGTGCTGTGTCTTTCTGTTGAGGAAGGTTGCTGCTGGGAAAGAGTTGGATACGGATTTGTTTTCAAGGGTTTTGAAGGTTTTTACTGGAAATGGGAATGTGTTGACTGATTCTGTGGCTAATGCTGTGCTGAAGTCTTTGACCAGTGTTGGTAGGACTGGGGAGTGGAACAAGGTTTTGAAAGAAATGGAAGATTGTGGGTTTGTTGCTGGTGGTAGTTTACAGAGTAAAATTGCCTATAGACTTGGTGCAGCGGGTAACAAGGAACAAGCTCATGAGTTCATGAATAGAATTGAGGTGTCTGGATCCAATCCATATCGCAAGACATGGGAATCTTTAATTCAGGGGTACTGTGTAGCTGGGAACCTTGATAAAGCTTTTGAATCTTTTAAAGAGATTGTTGAGAAAGAGGGGGTTGCTTCTGCAGGCTATTCTTTTAATGTGTTAATGAATTCATATTGCCAAATGAATAGGGCGGTAGATGCAAGCAAGATTCTTTGCCGACTGGTGAATGAGAAACAGTTAAAGCCCTGGCATTCTACTTACAAGCTACTGGTAACCAAGTTACTGGTTCAAGGAGGATTTACAGATGCATTGAATATTTTGGGATTAATGAGAACCCACGGATTTCCACCTTTTACTGATCCATTTATTGAACACTTGTCAAAGAGTGGAAGTGGCGATGATGCTGTACTGTTTCTCAAGGCAATGACATCAAAGAGGTTTCCATCTACATCCATGTTTCTCCGTATGTTTGAAGCCTTTTTCAAGCACAGAAGGCATGAAGAAGCACAAAATTTCCTCTCGAAATGTCCACGCTACATCCGCAATCATGCTGATGTCTTGAATCTCTTTTGTTCCTTGAACTCTAAAGAAGCTGCTTCTTCTAGTATGTTGGCTGCTTAA

Predicted protein sequences of Glyma18g51345

Limit To All Plant Sequences

>Glyma18g51345.1   sequence type=predicted peptide   gene model=Glyma18g51345   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRHQWRLLHHLLRSRPRITYHSQVLPYSSSIPRRFAANSTFPLNPSFRRFSSEPVLAQADTDHLLVADIFSKPVDSEDFKTLLGSNRVSITHDAVLAVLGKFDSNVDAARRFFQWVSENHPERLSSKCYNSMLCVLGTNGFVDEFWDLVNVMKKKGYGVSKGVKERVLESFEKGGMDGDVAKLKGLFDNSKEKNIAIVCRIVRNNVWGDDVEKQIEDLNVGFSSEVVKTVLESLVLEPVKALIFFRWLEESGLFKHDGRTYNAMARVLGREDLIDRFWKLVGDMRSAGFEMEAETFVKVLGRFCKRRMVKDAVELYEFAMAGANKPTVQCCVFLLRKVAAGKELDTDLFSRVLKVFTGNGNVLTDSVANAVLKSLTSVGRTGEWNKVLKEMEDCGFVAGGSLQSKIAYRLGAAGNKEQAHEFMNRIEVSGSNPYRKTWESLIQGYCVAGNLDKAFESFKEIVEKEGVASAGYSFNVLMNSYCQMNRAVDASKILCRLVNEKQLKPWHSTYKLLVTKLLVQGGFTDALNILGLMRTHGFPPFTDPFIEHLSKSGSGDDAVLFLKAMTSKRFPSTSMFLRMFEAFFKHRRHEEAQNFLSKCPRYIRNHADVLNLFCSLNSKEAASSSMLAA*

>Glyma18g51345.2   sequence type=predicted peptide   gene model=Glyma18g51345   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRHQWRLLHHLLRSRPRITYHSQVLPYSSSIPRRFAANSTFPLNPSFRRFSSEPVLAQADTDHLLVADIFSKPVDSEDFKTLLGSNRVSITHDAVLAVLGKFDSNVDAARRFFQWVSENHPERLSSKCYNSMLCVLGTNGFVDEFWDLVNVMKKKGYGVSKGVKERVLESFEKGGMDGDVAKLKGLFDNSKEKNIAIVCRIVRNNVWGDDVEKQIEDLNVGFSSEVVKTVLESLVLEPVKALIFFRWLEESGLFKHDGRTYNAMARVLGREDLIDRFWKLVGDMRSAGFEMEAETFVKVLGRFCKRRMVKDAVELYEFAMAGANKPTVQCCVFLLRKVAAGKELDTDLFSRVLKVFTGNGNVLTDSVANAVLKSLTSVGRTGEWNKVLKEMEDCGFVAGGSLQSKIAYRLGAAGNKEQAHEFMNRIEVSGSNPYRKTWESLIQGYCVAGNLDKAFESFKEIVEKEGVASAGYSFNVLMNSYCQMNRAVDASKILCRLVNEKQLKPWHSTYKLLVTKLLVQGGFTDALNILGLMRTHGFPPFTDPFIEHLSKSGSGDDAVLFLKAMTSKRFPSTSMFLRMFEAFFKHRRHEEAQNFLSKCPRYIRNHADVLNLFCSLNSKEAASSSMLAA*

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