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Report for Sequence Feature Glyma18g51290

Feature Type:gene_model
Chromosome:Gm18
Start:60224267
stop:60224935
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g51290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G15733AT Annotation by Michelle Graham. TAIR10: SCR-like 11 | chr4:8961720-8962119 FORWARD LENGTH=86 SoyBaseE_val: 2.00E-13ISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
PF06876PFAM Plant self-incompatibility response (SCRL) protein JGI ISS
UniRef100_I1N4U4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4U4_SOYBN SoyBaseE_val: 1.00E-75ISS
UniRef100_P82629UniRef Annotation by Michelle Graham. Most informative UniRef hit: Defensin-like protein 242 n=1 Tax=Arabidopsis thaliana RepID=DF242_ARATH SoyBaseE_val: 2.00E-09ISS

Expression Patterns of Glyma18g51290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g51290 not represented in the dataset
Glyma18g51290 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g51290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g277700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g51290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g51290
>Glyma18g51290.1   sequence type=CDS   gene model=Glyma18g51290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCAGTGTGTGTATATATACTCTGATTTGGATGCAAGAAGAGTTCAAATTGTGTTGGAGCAAAATACCATCATGAAGCTAAGAAGCATTCTCCTTATTGTGTGGGCTTTGTTTGCTCTCTTGAGCCACGCTTATGGGGAAATCCGTTTTTGCCAAAAAGAAATGACGTTGGATGGGTCATGTCCACTTGGGACTTCAGGGGAAAGCTGCTTTCTGGAATTCCTGAATAGATTGGGAGCAAGTGCCATGCCTATGAATTGCTCTTGCAAAGATGATCCTTCCCATAATAAACGCCAATGCACTTGTAATGTTGTGTGTAACACATGA
Predicted protein sequences of Glyma18g51290
>Glyma18g51290.1   sequence type=predicted peptide   gene model=Glyma18g51290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHQCVYIYSDLDARRVQIVLEQNTIMKLRSILLIVWALFALLSHAYGEIRFCQKEMTLDGSCPLGTSGESCFLEFLNRLGASAMPMNCSCKDDPSHNKRQCTCNVVCNT*






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