Glyma18g51260 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g51260

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60197967
stop:	60201157
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02360	AT	Annotation by Michelle Graham. TAIR10: 6-phosphogluconate dehydrogenase family protein \| chr3:482498-483958 FORWARD LENGTH=486	SoyBase	E_val: 0	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0010359	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity	SoyBase	N/A	ISS
GO:0043090	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid import	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0050661	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADP binding	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG2653	KOG	6-phosphogluconate dehydrogenase	JGI		ISS
PTHR11811	Panther	6-PHOSPHOGLUCONATE DEHYDROGENASE	JGI		ISS
PF00393	PFAM	6-phosphogluconate dehydrogenase, C-terminal domain	JGI		ISS
PF03446	PFAM	NAD binding domain of 6-phosphogluconate dehydrogenase	JGI		ISS
UniRef100_I1N4U1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Glycine max RepID=I1N4U1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1N4U1	UniRef	Annotation by Michelle Graham. Best UniRef hit: 6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Glycine max RepID=I1N4U1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g51260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51260

Paralog	Evidence	Comments
Glyma08g28230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g277300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g51260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g51260

Limit To All Plant Sequences

>Glyma18g51260.1   sequence type=CDS   gene model=Glyma18g51260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAACCCACAACAAGAATAGGCCTTGCTGGATTGGCTGTTATGGGCCAAAATCTGGCACTCAATATTGCTGAGAAAGGCTTTCCCATTTCTGTTTACAACCGAACCACTTCCAAGGTTGATGAGACAGTAGAACGAGCAAAACAAGAAGGAAATCTTCCAGTTTATGGCTACCATGACCCTGAAGCTTTTGTTCATTCCATTCAAAAGCCTAGGGTGATAATAATGCTTGTTAAGGCTGGGGCACCTGTTGACCAGACCATTAAGACCCTATCTGCGTACATGGAAAAAGGTGACTGTATAATTGATGGTGGTAACGAATGGTATGAGAACACTGAAAGAAGAGAGAAAGAGGTGGCTGAATTGGGTCTGCTCTACCTTGGGATGGGAGTTTCTGGTGGTGAGGAAGGTGCTCGTAATGGTCCCTCTTTGATGCCTGGTGGTTCGTTTGAGGCTTTCAAATACATAGAAGATATTCTTCTCAAGGTGGCAGCTCAAGTACCTGACAGTGGTCCTTGCGTGACTTATATTGGTAAAGGTGGTTCTGGTAATTTTGTGAAGATGATCCACAATGGCATTGAGTATGGTGACATGCAGCTGATTGCAGAGGCCTATGATGTGCTGAAATCAGTTGGAAAGTTGTCAAATGAGGAACTACAAAGTGTCTTCTCAGAATGGAACAAGGGAGAACTTCTGAGTTTCCTGATTGAAATCACTGCAGATATATTTGGAATTAAGGATGATAAGGGAGATGGATATCTTGTTGACAAGGTCCTAGACAAGACTGGCATGAAGGGCACTGGTAAGTGGACTGTTCAGCAAGCTGCTGAATTATCAATTGCTGCTCCCACTATTGAAGCATCATTGGATGCAAGGTTCCTGAGTGGGTTGAAGGAGGAAAGAGTTGAAGCTGCAAAGGTCTTTAAATCAGGTGGCATTGGTGATATTGTGACTGATCAACCTGTAGACAAGCAGAAGTTGATTGATGATGTTAGGAAGGCTCTTTATGCAGCCAAAATCTGTAGTTATGCACAGGGAATGAATTTGATCCGTGCAAAGAGTATTGAAAAGGGTTGGGATTTGAAGTTGGGTGAACTGGCCCGGATTTGGAAAGGGGGTTGCATTATTAGAGCAATATTCTTAGACAGAATCAAGCAGGCATATGAAAGAAACCCTAATCTGGCAAACCTTCTTGTGGATCCAGAGTTTGCAAAGGAAATAATTGATTACCAATCTGCCTGGAGGAGAGTTGTTTGCCTTGCTATCAATTCTGGTATTAGCACTCCAGGTATGTCTGCTAGTCTTGCTTATTTTGACACTTACAGAAGGGAAAGGTTGCCAGCTAATTTGGTGCAAGCTCAACGAGACTACTTTGGTGCTCATACATATGAAAGGGTTGACATAGAGGGGTCTTACCATACTGAGTGGTTCAAGCTTGCCAAACAGTCAAGAAATTAG

Predicted protein sequences of Glyma18g51260

Limit To All Plant Sequences

>Glyma18g51260.1   sequence type=predicted peptide   gene model=Glyma18g51260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQPTTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPVYGYHDPEAFVHSIQKPRVIIMLVKAGAPVDQTIKTLSAYMEKGDCIIDGGNEWYENTERREKEVAELGLLYLGMGVSGGEEGARNGPSLMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYIGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGLKEERVEAAKVFKSGGIGDIVTDQPVDKQKLIDDVRKALYAAKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAIFLDRIKQAYERNPNLANLLVDPEFAKEIIDYQSAWRRVVCLAINSGISTPGMSASLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDIEGSYHTEWFKLAKQSRN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain