Glyma18g51230 - SoyBase

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Report for Sequence Feature Glyma18g51230

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60165720
stop:	60171309
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11390	AT	Annotation by Michelle Graham. TAIR10: WPP domain-interacting protein 1 \| chr5:3633971-3636418 FORWARD LENGTH=703	SoyBase	E_val: 1.00E-130	ISS
GO:0006913	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0005635	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
UniRef100_G7KS23	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WPP domain-interacting tail-anchored protein n=1 Tax=Medicago truncatula RepID=G7KS23_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F3E5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F3E5 related cluster n=1 Tax=unknown RepID=UPI000233F3E5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g51230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51230

Paralog	Evidence	Comments
Glyma08g28201	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g276900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g51230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g51230

Limit To All Plant Sequences

>Glyma18g51230.2   sequence type=CDS   gene model=Glyma18g51230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACCCAAAGTGGTGAAGACACTGTTGATATTGATCTTGGAGGTGTTTCATCCAGTGGAGAAGCGATTGGGGATCTGGGTGATGACATTGTCACAGTGCTCACTGGGCTGGAATTGAATGTTGCATGTTTCTCTGAGAAAGTTGCAAACTTTAGCAATTTTGTGATGCACTTGGAAACTCTTGGGTTTGAATTGGAGGGCTTGGATCTGGAGAAAGAAGACAATGATGTGGACAACATGGATTGTGTTGGGAAGTTTCTGGAGTTTGATCTGTTGTGTGGGGTGTTGGGTTCTGAGATTGTGGAATTGGATAGGTTCCTGGACACCCTTCATGCTGAAATTGCTGATTCTGGGGAGAGGGTGGCCTCTTGCAAGACTTGGCAAGACAAGTTGGTTGATTCTGAGCAATGTTTGAGGCAGTCTGAGATGCAGTTTTCAGAGATTAAGAAACAGTCTGCTAGTTTTGAGAGGACTCTGTCTTCTTATAAGAGGGGAGGAAATGATAATGTTGAAGAGGGTGAGATCATCTTAGAGGATGATGAATCTTTAAATGTAAGCACAGTGATAAACATGCAAACACCTGAGCAACAAAGACATGTTCTGAGGATGCTAGAGAAATCTTTAGCAAATGAAATAGATCTTGAGAAGAATTTCATCGACTCAAGGCAAATTGAAGAAAAGCTAAAACAAAAGATGGTTTCTTTAGAACAAGAGCTAATTCTCATGGAGGAAGAAGCAACTGATGCTTGTGAGAGATGGCTTGAGGCAGATAATGCAAGTGAGATACTGACGGGAATTTCAAAACAACTGTTGGGTAGACTTCAGATTTCCCAGTTCAATTTGAATGGTTTAAGTCAGCGTGAATCTGAACTCAGAACTAAGCTTGAAACTTGTATAGAACAATTGAAAGAGAAGGATGTTGTTTCGGACAAGATTGAACAATTGAATGATAAACTAATTCTTGCCAATTCTCAGGTTGTTGCTTTAAGCGTCGAGGTGTGTTCACTTGAGAAGCAGCTAAAAGAATCTGAATGCCAGGTACTGAATGTGAAGGCTTCTGCTGATGAATATCAGAAACAGTATAATATTCTGTGTTCTGAAGTGAGAGACATGGAAGAAGTTATTGTTGAATTGAAAGAAAATGTATCTAATGCGGAAAGTCGGGCTAATACTGCAGAATCTCTGTGTAAGTTATTGACAGAGACTAACGATGAACTCAACAAGCAGTTGGCTCTTTTGAAAGATGGTGGTGGCAAATCTGAGAGGGTAGAGTCACTTGAGAGGCAGCTAAGGGAATCCGATTTACAGCTGCAGCAAGCAGTAGCATCTGCTGAAGCTAGTCAAGAGAAGCAAAGTATGTTGTATTCCACAATTAAAGATATGGAGCATGTGATAAAGGATCTTAAGTCAAAGGTTTCTAAAGCTGAGAGTCGGGCTGACAGTGCAGAGGAGAAATGCATCATATTATCTGAATCTAATAGTGATTTAAACGAGGAATTAAACTTCTCGAGGAGTAGATTGGAATGCTTGGAGGGATCACTACACCAAGTGGAGGAAGCCAAAGTGGCATCTGCAAAAGATATCGGAAAGCAGACCAAAGTATTCAAAAATTTGGTGATGCAGCTGGCTGTTGAGAGAGAGCGTCTTAATAAGCAGCTGTCCTCCTTAGCAAGTGAGAACAAAATATTGGTAGTGAAGCTAAAGCAGACAAATAAGCATCCTTCTCAAGAAGTTACTGTGACTTTTGCTACTGACCATGAGGTGGACAGAACTTGGAAAAATTCATCTACAAATGATAATGAAGTAAAGTTTACAGATACTATGCCAGATGCTGGTACTGTGAGGAGAATAGATGCAGGAGTTCTTAATTTTAAGCATTTATTCATGTTATCAGTGCTTGTCTTACTGTTTTCAGCCGTGACTTATCTGAATGTCGATGCCAATCTTTGA

Predicted protein sequences of Glyma18g51230

Limit To All Plant Sequences

>Glyma18g51230.2   sequence type=predicted peptide   gene model=Glyma18g51230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTQSGEDTVDIDLGGVSSSGEAIGDLGDDIVTVLTGLELNVACFSEKVANFSNFVMHLETLGFELEGLDLEKEDNDVDNMDCVGKFLEFDLLCGVLGSEIVELDRFLDTLHAEIADSGERVASCKTWQDKLVDSEQCLRQSEMQFSEIKKQSASFERTLSSYKRGGNDNVEEGEIILEDDESLNVSTVINMQTPEQQRHVLRMLEKSLANEIDLEKNFIDSRQIEEKLKQKMVSLEQELILMEEEATDACERWLEADNASEILTGISKQLLGRLQISQFNLNGLSQRESELRTKLETCIEQLKEKDVVSDKIEQLNDKLILANSQVVALSVEVCSLEKQLKESECQVLNVKASADEYQKQYNILCSEVRDMEEVIVELKENVSNAESRANTAESLCKLLTETNDELNKQLALLKDGGGKSERVESLERQLRESDLQLQQAVASAEASQEKQSMLYSTIKDMEHVIKDLKSKVSKAESRADSAEEKCIILSESNSDLNEELNFSRSRLECLEGSLHQVEEAKVASAKDIGKQTKVFKNLVMQLAVERERLNKQLSSLASENKILVVKLKQTNKHPSQEVTVTFATDHEVDRTWKNSSTNDNEVKFTDTMPDAGTVRRIDAGVLNFKHLFMLSVLVLLFSAVTYLNVDANL*

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