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Report for Sequence Feature Glyma18g51221

Feature Type:gene_model
Chromosome:Gm18
Start:60153711
stop:60157420
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g51221
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G30390AT Annotation by Michelle Graham. TAIR10: Transmembrane amino acid transporter family protein | chr3:11977112-11978827 REVERSE LENGTH=460 SoyBaseE_val: 0ISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0015171GO-mf Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity SoyBaseN/AISS
KOG1305 KOG Amino acid transporter protein JGI ISS
PTHR22950Panther AMINO ACID TRANSPORTER JGI ISS
PF01490PFAM Transmembrane amino acid transporter protein JGI ISS
UniRef100_G7KS18UniRef Annotation by Michelle Graham. Most informative UniRef hit: Amino acid transporter n=1 Tax=Medicago truncatula RepID=G7KS18_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233EE52UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EE52 related cluster n=1 Tax=unknown RepID=UPI000233EE52 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g51221
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g51221 not represented in the dataset
Glyma18g51221 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51221
ParalogEvidenceComments
Glyma08g28190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51221 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g276800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g51221
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g51221
>Glyma18g51221.1   sequence type=CDS   gene model=Glyma18g51221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGATTAGTAGTCTTGCACCTAAGGCAGAGAGGAAGAAATCAAGGAAGAGCAAGGCAGTTGTTAATGAGAATGCACCCTTGTTGCCAAAAAGTCATGTTCAGGAGAGTGATGCTGGGTTTGATGATTTCAATGGAGCTTCATTTTCTGGGGCTGTTTTTAACTTGTCCACCACAATTATTGGTGCTGGCATCATGGCCTTGCCTGCAACCTTGAAACAGTTGGGGATGATACCTGGTCTTCTTGCCATCATCATCATGGCTTTGTTGACAGAGAAGTCAATTGAGCTTTTGATTCGGTTTACCCGGGCAGGGAAGTCTGTTTCTTATGCTGGTCTCATGGGGGATTCCTTTGGGAATTATGGAAAAGCTCTGGTGCAGATATGTGTTATAATCAATAACATCGGTGTGCTGATTGTTTACATGATTATAATTGGTGATGTGCTCTCTGGAACATCTTCAAGTGGAGATCATCACTATGGTATCCTTGAAGGATGGTTTGGTGTGCACTGGTGGACGGGGCGAACATTTGTTGTCCTTTTTACAACACTTGCCATATTTGCACCCCTTGCAAGCTTTAAGCGAATTGATTCATTGAGATTCACATCAGCCCTTTCAGTCGCACTTGCAGTTGTTTTTCTAGTCATTGCCGTGGGAATTGCAGTTGTCAAGATATTCAGTGGAGGCATTGCGATGCCCAGACTCTTCCCTGTCACTACTGATGTGGCATCATTCTTTAGACTATTCACTGTAGTTCCTGTGTTTGTGACTGCATATATCTGCCACTACAATGTTCACAGCATAGACAATGAACTTGAGGACTCCTCACAGATGCGAGGGGTAGTACAAACCGCCCTTGTTCTATGCTCTTCAGTGTACGTAATGATAAGCTTCTTTGGGTTCCTCCTATTTGGCGAAGGAACTCTTGATGATGTGCTGGCCAATTTCGATACCAATCTTGGAATTCCTTTCGGTTCTGTGCTCAATGATGCTGTTCGTATAAGCTACGCCGCACACCTGATGCTTGTATTTCCAGTTGTCTTCTTTCCATTGCGTCTCAACATAGATGGCCTCCTCTTCTCTAAATCAAGGCCTCTGGTTCTGGATAACTTCAGATTTGCATCACTCACTATTGCCCTTATTGGTGTTATCTTCCTGGGAGCAAATTTCATACCTAGCATTTGGGATGCTTTCCAGTTTACTGGAGCAACTGCCGCAGTCTGTATAGGATTCATTTTTCCAGCTGCCATCACTCTTAGGGACCGCTACAACATTGCAACTAAATCAGACAAGATTTTGTGTGTCATTATGATAGTCCTCGCAGTCTTCTCAAACGTTGTGGCTATATACAGTGATGCATATGCCTTGATCAAGCAGAACAAAACTTCACGAGAATGA
Predicted protein sequences of Glyma18g51221
>Glyma18g51221.1   sequence type=predicted peptide   gene model=Glyma18g51221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTISSLAPKAERKKSRKSKAVVNENAPLLPKSHVQESDAGFDDFNGASFSGAVFNLSTTIIGAGIMALPATLKQLGMIPGLLAIIIMALLTEKSIELLIRFTRAGKSVSYAGLMGDSFGNYGKALVQICVIINNIGVLIVYMIIIGDVLSGTSSSGDHHYGILEGWFGVHWWTGRTFVVLFTTLAIFAPLASFKRIDSLRFTSALSVALAVVFLVIAVGIAVVKIFSGGIAMPRLFPVTTDVASFFRLFTVVPVFVTAYICHYNVHSIDNELEDSSQMRGVVQTALVLCSSVYVMISFFGFLLFGEGTLDDVLANFDTNLGIPFGSVLNDAVRISYAAHLMLVFPVVFFPLRLNIDGLLFSKSRPLVLDNFRFASLTIALIGVIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLRDRYNIATKSDKILCVIMIVLAVFSNVVAIYSDAYALIKQNKTSRE*






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