Glyma18g51160 - SoyBase

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Report for Sequence Feature Glyma18g51160

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60113456
stop:	60125967
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15700	AT	Annotation by Michelle Graham. TAIR10: DNA/RNA polymerases superfamily protein \| chr5:5115793-5121609 REVERSE LENGTH=1011	SoyBase	E_val: 0	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0042651	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid membrane	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity	SoyBase	N/A	ISS
GO:0034062	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA polymerase activity	SoyBase	N/A	ISS
KOG1038	KOG	Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation	JGI		ISS
PTHR10102	Panther	T3/T7 BACTERIOPHAGE-RELATED MITOCHODRIAL DNA-DIRECTED RNA POLYMERASE	JGI		ISS
PF00940	PFAM	DNA-dependent RNA polymerase	JGI		ISS
UniRef100_I1N4T1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max RepID=I1N4T1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F3E1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F3E1 related cluster n=1 Tax=unknown RepID=UPI000233F3E1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g51160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51160

Paralog	Evidence	Comments
Glyma08g28111	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g276200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g51160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g51160

Limit To All Plant Sequences

>Glyma18g51160.2   sequence type=CDS   gene model=Glyma18g51160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCCTTCCCCCAATTCCCTCGCCAAGGGACTCAATTCTCTTCCCAACCCTCTCATTTCCCAATCCTCTCACTCCGCCATTTCGTCGAACATGTGGCGGCACGCCGCCAAACACGTCTGCCGCGGTATTATTCGCCAAAACTTCCACCCTCCAAGGCTTCTCGCTCTCTCCCACGGCTCCGTTTTCTCCCCCAAAAGGGAGGTTTTGCTGTCCAGCGTGGCAAAACTAAACTGTATTGCCCGTGGCGATTTCCAGTTTCAGTTTGGCGCCAAAGGGTATTCCGGTGTTGCCGAGGCGGTTTCTTCCACTGATGTGGAGGAAGATGGTGGTACTGCTGTTGATGAAATTCAGCAACTTTTATGGCAGGAGATGAATGACGAAGTGGAGAGTCAACTGGGGGAGGAAGAGGGTGCCCCAATTGATGAAATTCAGCAACTGTTATTGCAGGAGATGAATGAAGAAGAGAAGAATGAATTGGTGGAGGAAGAGGCTGCCCCAGTTGATGGAATTCAAGAGCTATTGCAGGGGATGAAGAAAGAGAAGCAGAAGAAGGTGGTTGGGTATAGGTGGAAGAATCAGGGGAAGGGTGTGGGGCAGTCTAGGTACCAGGAGCTGAGAAGGAGGCAGGTTAAGATTGAGACTGAGATGTGGGAAGAGGCGGCGAAGGAGTATAGGGAGCTTTTGATGGACATGTGTGAGCATAAGCTGGCACCCAATTTGCCATACATGAAGTCGCTCTTTCTCGGCTGGTTTGAGCCTCTGAGGGATGCCATTGTCAAGGAACAGGAGATGTATAGTGAAGGGAAGAATAGGATGGCCTATGCGCCATACTTTGTTCAGTTGCCGGCTGACAAGATGGCTGTTATCGCAATGCATAAGTTGATGGGGCTGTTGATGACAGGAAACGAACGTGTCACCATTGGCACTGCCAGGGTTGTGCAGGCTGCGTGCGGCATAGGCGATGCCATTGAAAATGAGGTTAGAATACACAAGTTCTTGGAGAAAACTAAGAAGAAAAAGGGTGATAGAAGCAACAAAAATAAAGCAGGTGAGTCTGTTGCTGACATCAAAGAGGAACAAAAGCTACGGAAAAAAGTCATTGATTTGATGAAAAAGCAAAAGCTAGTTGCAGTGAGGGGGCTAGTGAAGGGCAAGGATGATACAAAACCGTGGGGAGCAGTCATAAAGACAAAGGTAGGAAGCCGTTTAATTGAGCTCTTGTTGCAAACAGCATATATACAACCACCATCAGATCAATTACCGGATGCTGCACCTGATATCCGACCTGCATTTGTTCATTCATTTAAAACAGTGACAAAAGAGTCAATTAAAGCAAGCAGAAGATATGGTATTATTCAATGTGACCCTCTAATTCTTAAAGGACTTGAAAGAACCGCCAAAAATATGGTCATTCCTTATATGCCTATGTTGGTTCCACCGGTCAACTGGACAGGTTATGACAAAGGTGGACACTTGTTCTTACCCTCTTATGTCATGCGTACTCATGGAGTCAGGCAACAGCGTGAAGCTGTTAAGAGGGCCCCTAGGAAGCAACTAGAGCCTGTATTTGAGGCTCTGGATACTCTCGGGCATACGAAATGGAGGGTAAATAAGAAGGTACTGAGTGTTGTAGACAGGATATGGGCTAGTGGAGGCCGTATTGCTGATTTGGTGGACCGCGATGATGTTCCTTTACCTGACGAGCCAGATACTGATGATGAAGCGAAGATAAAGAAATGGAAGTGGAAATACAAATCTCTGCAGAAAGAGAACAGAGAGAGATATTCACAACGTTGTGACATAGAACTTAAACTTGCTGTAGCGCGAAAAATGAAGGATGAAGAGGGTTTTTACTACCCACACAACCTTGATTTCCGAGGGCGTGCATATCCCATGCACCCACACTTAAATCACCTTGGTTCAGATTTATGCCGGGGTATATTGGAATTTGCAGAGGGACGCTCTCTTGGAAAGTCGGGCCTACGTTGGCTGAAGATACACTTGGCAAATCTATATGCTGGTGGTGTTGATAAACTATCATATGAAGGTCGCTTAGCGTTCACTGAAAATCATTTTGAAGACATATTTGATTCTGCAGACAAACCTCTTGAAGGGAGGCGGTGGTGGTTGAAAGCAGAAGATCCATTGCAGTGCTTAGCTGTGTGCATAACTCTAACTGAAGCTTTAAGAAGTTCTTCACCAGAAACATTCATCTCACATATTCCAGTACATCAGGATGGCTCCTGTAATGGCTTACAACATTATGCTGCCTTGGGGAGAGACAAGTTAGGGGCTGCTGCTGTCAATCTAGTTACAGGAGAGAAGCCAGCAGATGTTTACTCAGGAATAGCAGCTAGAGTATCAAACATCATGCAAAGGGATGCTCAGAAAGATCCTGCAGTTTTTCGTGATGCTCTTCATGCAAGGACTTTAGTTAATCAGGTGGATAGAAAATTGGTTAAGCAGACAGTGATGACATCAGTGTATGGTGTCACTTATATTGGTGCACGGGAGCAGATAAAAAGGAGATTGAAAGAAAGGAATGCCATTTCAGATGATAAAGAGCTCTTTGGTGCTTCTTGTTATGCTGCAAAGGTCACCTTAACTGCCTTAGAGGAGATGTTTCAAGGTGCACGAGGTATCATGAGCTGGCTTGGTGACTGTGCAAAAGTAATTGCTTCTGAAAATCAACCAGTGCGCTGGACCACTCCTCTTGGACTTCCTGTGGTGCAACCTTACCGTAAACTAGGAAAGCATATTATCAAAACTTCACTTCAAATTTTGACATTGCAGCGAGAAACAGATAAGGTCATGGTCACAAGGCAGAGGACAGCATTTCCGCCAAATTTTGTTCATTCACTTGATGGTTCTCATATGATGATGACTGCTGTTGCCTGCAAAAAGGAAGGTTTGAGTTTTGCAGGGGTTCATGATTCATATTGGACGCATGCATGCGATGTGGATAAAATGAACAGAATACTGAGAGAGAAGTTTGTAGAACTCTACGAGACCCCAGTGCTGGAAAATTTACTGGAGAGCTTTCAGAGCTCTTTCCCATCATTATCTTTTCCATCCTTGCCTGAACGGGGAGACTTTGACTTGAAGGAAGTTTTAGAGTCACCATATTTCTTCAACTGA

Predicted protein sequences of Glyma18g51160

Limit To All Plant Sequences

>Glyma18g51160.2   sequence type=predicted peptide   gene model=Glyma18g51160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFPSPNSLAKGLNSLPNPLISQSSHSAISSNMWRHAAKHVCRGIIRQNFHPPRLLALSHGSVFSPKREVLLSSVAKLNCIARGDFQFQFGAKGYSGVAEAVSSTDVEEDGGTAVDEIQQLLWQEMNDEVESQLGEEEGAPIDEIQQLLLQEMNEEEKNELVEEEAAPVDGIQELLQGMKKEKQKKVVGYRWKNQGKGVGQSRYQELRRRQVKIETEMWEEAAKEYRELLMDMCEHKLAPNLPYMKSLFLGWFEPLRDAIVKEQEMYSEGKNRMAYAPYFVQLPADKMAVIAMHKLMGLLMTGNERVTIGTARVVQAACGIGDAIENEVRIHKFLEKTKKKKGDRSNKNKAGESVADIKEEQKLRKKVIDLMKKQKLVAVRGLVKGKDDTKPWGAVIKTKVGSRLIELLLQTAYIQPPSDQLPDAAPDIRPAFVHSFKTVTKESIKASRRYGIIQCDPLILKGLERTAKNMVIPYMPMLVPPVNWTGYDKGGHLFLPSYVMRTHGVRQQREAVKRAPRKQLEPVFEALDTLGHTKWRVNKKVLSVVDRIWASGGRIADLVDRDDVPLPDEPDTDDEAKIKKWKWKYKSLQKENRERYSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRSLGKSGLRWLKIHLANLYAGGVDKLSYEGRLAFTENHFEDIFDSADKPLEGRRWWLKAEDPLQCLAVCITLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVTGEKPADVYSGIAARVSNIMQRDAQKDPAVFRDALHARTLVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERNAISDDKELFGASCYAAKVTLTALEEMFQGARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYRKLGKHIIKTSLQILTLQRETDKVMVTRQRTAFPPNFVHSLDGSHMMMTAVACKKEGLSFAGVHDSYWTHACDVDKMNRILREKFVELYETPVLENLLESFQSSFPSLSFPSLPERGDFDLKEVLESPYFFN*

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