Glyma18g51120 - SoyBase

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Report for Sequence Feature Glyma18g51120

Feature Type:	gene_model
Chromosome:	Gm18
Start:	60079710
stop:	60081841
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_UPI000233EE4F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EE4F related cluster n=1 Tax=unknown RepID=UPI000233EE4F	SoyBase	E_val: 2.00E-168	ISS

Expression Patterns of Glyma18g51120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51120

Paralog	Evidence	Comments
Glyma08g28050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g275800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g51120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g51120

Limit To All Plant Sequences

>Glyma18g51120.2   sequence type=transcript   gene model=Glyma18g51120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTAAGTTTTCTCTCTTTCAGTTAAAGAAAAACACAAACTCATGAAAAGAAGAAACATGGATCAGATGAAGATCACGGCGCTCTCGATCTTTTTACTAGGATGTCTCTTGGTCATGGCTGTCCAAGGAGATTCATCAGCAAGAGTTCTTCCAGCTGTAACTGCAGTTGAGGTAGGGAATATAAACAAGCTTGGAGTGTCATCTCAAAAGGAACCATTTATGAGAACTGGAGCTGGTCATCACATGAGGAAGCAAGGGCTTGGGGGAAAGAAATTTAGCACAAATGAGGTGACAAGTGTGGACTCTAAGAATGGAAAAGGAGCAGATGGAGGAGAGACTTCAAAGACTTCAGGTAAGGATAATGATGGTTTGAAGAAGTCTTCTGGATCACGAGACCAAAAGAATGATGATCAGAAGCTTGTGATAATGGGACCAAAGGAATATTTGAAATCCACCAAGTTTGTAGTTCCAAGAAGAATTCCCACCAGCACGTACCCGAAGTCAAGTTCACAATATTGCAATATTGCTGCGCCAGTAGTTAAATCCAGCTTAGGGAGTTCCTCAAGTCATGAACAGAAAATTTCTGAAGAAACACCTCAAAATAGTACTCAGAAAGATGAGACACAAAGATTTGCTGACGCTGCAAAAGAGATTGCATACATGATGAATAAGGATTATCATGGAAGACCGAGTCACAGGCCACCCATAAATAACAATGAGCCTAGAAATTAAGTGAGATTATCATGAGTAATTAATAGCATGGATATATATATATATATCTATAGGCTCACAGTTTTGCACCAAGTTGTTGCGTTAGCAACTACTTCTTGGTAATGGCCTAGATATATATATGATATAGTTTGCTTTATATTATAGTTTAATATGTGGCACAAAGGCAAGCAAAACCATAGGACTTAAGTAACAAATAGTTGTTCGGTCGTTTCTTTTTCATACTAAAAAATAGATATATGTAGAACGCATGCAGTTTTGAGTGTTGTAATTATTAAGTGTATCATCGTTACATCTTTAATTATGCGAGTTAATTTTTTTTTCAATGATAA

Coding sequences of Glyma18g51120

Limit To All Plant Sequences

>Glyma18g51120.1   sequence type=CDS   gene model=Glyma18g51120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGAAGAAACATGGATCAGATGAAGATCACGGCGCTCTCGATCTTTTTACTAGGATGTCTCTTGGTCATGGCTGTCCAAGGAGATTCATCAGCAAGAGTTCTTCCAGTTGAGGTAGGGAATATAAACAAGCTTGGAGTGTCATCTCAAAAGGAACCATTTATGAGAACTGGAGCTGGTCATCACATGAGGAAGCAAGGGCTTGGGGGAAAGAAATTTAGCACAAATGAGGTGACAAGTGTGGACTCTAAGAATGGAAAAGGAGCAGATGGAGGAGAGACTTCAAAGACTTCAGGTAAGGATAATGATGGTTTGAAGAAGTCTTCTGGATCACGAGACCAAAAGAATGATGATCAGAAGCTTGTGATAATGGGACCAAAGGAATATTTGAAATCCACCAAGTTTGTAGTTCCAAGAAGAATTCCCACCAGCACGTACCCGAAGTCAAGTTCACAATATTGCAATATTGCTGCGCCAGTAGTTAAATCCAGCTTAGGGAGTTCCTCAAGTCATGAACAGAAAATTTCTGAAGAAACACCTCAAAATAGTACTCAGAAAGATGAGACACAAAGATTTGCTGACGCTGCAAAAGAGATTGCATACATGATGAATAAGGATTATCATGGAAGACCGAGTCACAGGCCACCCATAAATAACAATGAGCCTAGAAATTAA

>Glyma18g51120.2   sequence type=CDS   gene model=Glyma18g51120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGAAGAAACATGGATCAGATGAAGATCACGGCGCTCTCGATCTTTTTACTAGGATGTCTCTTGGTCATGGCTGTCCAAGGAGATTCATCAGCAAGAGTTCTTCCAGCTGTAACTGCAGTTGAGGTAGGGAATATAAACAAGCTTGGAGTGTCATCTCAAAAGGAACCATTTATGAGAACTGGAGCTGGTCATCACATGAGGAAGCAAGGGCTTGGGGGAAAGAAATTTAGCACAAATGAGGTGACAAGTGTGGACTCTAAGAATGGAAAAGGAGCAGATGGAGGAGAGACTTCAAAGACTTCAGGTAAGGATAATGATGGTTTGAAGAAGTCTTCTGGATCACGAGACCAAAAGAATGATGATCAGAAGCTTGTGATAATGGGACCAAAGGAATATTTGAAATCCACCAAGTTTGTAGTTCCAAGAAGAATTCCCACCAGCACGTACCCGAAGTCAAGTTCACAATATTGCAATATTGCTGCGCCAGTAGTTAAATCCAGCTTAGGGAGTTCCTCAAGTCATGAACAGAAAATTTCTGAAGAAACACCTCAAAATAGTACTCAGAAAGATGAGACACAAAGATTTGCTGACGCTGCAAAAGAGATTGCATACATGATGAATAAGGATTATCATGGAAGACCGAGTCACAGGCCACCCATAAATAACAATGAGCCTAGAAATTAA

Predicted protein sequences of Glyma18g51120

Limit To All Plant Sequences

>Glyma18g51120.1   sequence type=predicted peptide   gene model=Glyma18g51120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRRNMDQMKITALSIFLLGCLLVMAVQGDSSARVLPVEVGNINKLGVSSQKEPFMRTGAGHHMRKQGLGGKKFSTNEVTSVDSKNGKGADGGETSKTSGKDNDGLKKSSGSRDQKNDDQKLVIMGPKEYLKSTKFVVPRRIPTSTYPKSSSQYCNIAAPVVKSSLGSSSSHEQKISEETPQNSTQKDETQRFADAAKEIAYMMNKDYHGRPSHRPPINNNEPRN*

>Glyma18g51120.2   sequence type=predicted peptide   gene model=Glyma18g51120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRRNMDQMKITALSIFLLGCLLVMAVQGDSSARVLPAVTAVEVGNINKLGVSSQKEPFMRTGAGHHMRKQGLGGKKFSTNEVTSVDSKNGKGADGGETSKTSGKDNDGLKKSSGSRDQKNDDQKLVIMGPKEYLKSTKFVVPRRIPTSTYPKSSSQYCNIAAPVVKSSLGSSSSHEQKISEETPQNSTQKDETQRFADAAKEIAYMMNKDYHGRPSHRPPINNNEPRN*

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