Report for Sequence Feature Glyma18g51090
Feature Type: gene_model
Chromosome: Gm18
Start: 60050762
stop: 60056872
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g51090
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G30300 AT
Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein | chr3:11921390-11924254 REVERSE LENGTH=677
SoyBase E_val: 0 ISS
GO:0000394 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009086 GO-bp
Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0016757 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups
SoyBase N/A ISS
PF10250 PFAM
GDP-fucose protein O-fucosyltransferase
JGI ISS
UniRef100_G7KRZ2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DUF246 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KRZ2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233EE4D UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EE4D related cluster n=1 Tax=unknown RepID=UPI000233EE4D
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g51090
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g51090
Paralog Evidence Comments
Glyma08g28020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g51090 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g275500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g51090
Coding sequences of Glyma18g51090
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g51090.1 sequence type=CDS gene model=Glyma18g51090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAAGGGGAAGTGAAAATGAAGTCAAAGATGAAATGGGTTGGTCTGTTCGGCCTTGTGCTCTCAGCTTTTTCCATCTTCATTCACTTCCTCCTTGCTAGATTCACTCAAATGGGTGTTGCAGACTATGAGTCCTCTGTCACAATCTTCTCTTGGAGACCCATCTTTGAGAAACCAATTCCCCCCACAAATACTCCCTCTTATAGAAAATTATGGGGTCCGGTGAAGCGTCTCGAATCATTGTATCCGGATTCAAATCCACGAGGATATTATGCTGATCCTGTTTCAGAAACAAATGGGTTTATTTTTGTCCGGATACAAGGGGGTTTTCATGAGATCAGGAATTCGATATGTGATGTTGTTGTGGTTGCTCGACTTCTCAATGCTACATTAGCTATGCCTGAGATCCAATCAACAACCAGCAGCAAGGGAATAAGCTCTCAGTTCAAGAGTTTTGCATACCTATATAATGAAGAGCAATTTGTCCTCTCATTAGCAAAAGATGTCACTGTTGTGAGAACTCTTCCGAAAGATCTGAAAGGTGCAAGGAGAAAGAAGGAGATTCCTGTTTTTAAAGTTCCATATTCAGCATCACCTTTTTATTATTTTCATCATGTTCTCCCTGTATTAAAGAAGCATTCGGTGGTTGAACTAGTTGTTTCTGAAGGTGGATGCTTGAAGGCCACTCTTCCTCCCAATTTTGAAGAATATCAAAGACTGAGATGTAGAGTTTCTTTTCATGCTCTTCAGTTTCGACAGGAAGTCCAGGAACTTTCTGCTAAGATTTTGCAGAGGTTACGAGCTCCTGGTCGTCCATTCATTGCCTTTGACCCTGGCATGACTAGAGAATCTTTAGCGTATCATGGTTGTGCAGAACTGTTCCAGGATGTACATACCGAACTTATTCAACACAAACGATCATGGATGATAAAACGTGGGATTGTCAAGGGGAAGCTTTCAGTCAACTCAGCCGAAGAAAGACTAAAAGGCTCCTGTCCTTTAATGCCTCAGGAGATTGGTATTCTTCTTCGTGCTTATGGATACTCAAAGGATGCAATTATTTATGTATCTGGAGGAGAAGTCTTTGGAGGTCAAAGAACATTGATTCCTCTTCATGCTATGTTTGAAAATGTTATTGATAGAACTTCTCTAAGCACTCCTTGGGAAATGATTAGGCTCTATGGGAAAGAGGTGAACCTTGTTGATACTCCTGGACCGCCACCTTTCGTTGAAGAAGTAACAAAGCGTGCAGCTTGGAAAAATGCAGGTCCACGTCCTCGCCCACTTCCTCCACCTCCAGCTAGGCCAAAATCATACAACATAGAAGGTTGGTGGGGTTGGGTAGCTGAGAGTGATAATGAGCCTGATAGTACAGTTATAGAACTGAGGACCAATGCCCATAAATTACTATGGGAGGCTATTGACTATGTGATCTGTGTTGAGGCTGATGTATTCATCCCTGGATTTGACCGTGACGGGAAGGGGCATCCAAATTTTGCTAGCTTGGTGATGGGGCACAGGCTATATCAGTCAGCTGCATCAAAGACATTTAGACCTGACAGAAAGGAAGTGGCTAAACTTCTAGACGAGATTTGTGACCATAGGCATCATGCAAATCATACATGGCTAGAAACAGTTCGAAGGCATTTGACAAAAACATTACTTGATGGAATTATAGAAGCATCAAATAAATCAAAACCACTATCCTTTCTCTCTCATCCAGTCCCTGAATGCTCTTGTTCACGGCGTGACTCCTTTGAAGTATCAAAGAATTCTTCTAGCCCTTTAACTTCCCAATTATGGACAGCTCTTAGTGTAGCTCACCAGTGTCCTGCATGGATGGACACTGGTCCAATTTCTCAATCAAAAGATAAGGAAAATGAAGAGGATGTCGACGAGGATGATTCTGTATCCGAGTTATTCTTTAAACAAAATGCTGAAAATCACGAAGGTGATGCAGAAGTGAACATTAAAGAAGAAAATCAGTTTGAGGATCAAGAAGATGACGGTGGGGAAAGATGA
Predicted protein sequences of Glyma18g51090
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g51090.1 sequence type=predicted peptide gene model=Glyma18g51090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKGEVKMKSKMKWVGLFGLVLSAFSIFIHFLLARFTQMGVADYESSVTIFSWRPIFEKPIPPTNTPSYRKLWGPVKRLESLYPDSNPRGYYADPVSETNGFIFVRIQGGFHEIRNSICDVVVVARLLNATLAMPEIQSTTSSKGISSQFKSFAYLYNEEQFVLSLAKDVTVVRTLPKDLKGARRKKEIPVFKVPYSASPFYYFHHVLPVLKKHSVVELVVSEGGCLKATLPPNFEEYQRLRCRVSFHALQFRQEVQELSAKILQRLRAPGRPFIAFDPGMTRESLAYHGCAELFQDVHTELIQHKRSWMIKRGIVKGKLSVNSAEERLKGSCPLMPQEIGILLRAYGYSKDAIIYVSGGEVFGGQRTLIPLHAMFENVIDRTSLSTPWEMIRLYGKEVNLVDTPGPPPFVEEVTKRAAWKNAGPRPRPLPPPPARPKSYNIEGWWGWVAESDNEPDSTVIELRTNAHKLLWEAIDYVICVEADVFIPGFDRDGKGHPNFASLVMGHRLYQSAASKTFRPDRKEVAKLLDEICDHRHHANHTWLETVRRHLTKTLLDGIIEASNKSKPLSFLSHPVPECSCSRRDSFEVSKNSSSPLTSQLWTALSVAHQCPAWMDTGPISQSKDKENEEDVDEDDSVSELFFKQNAENHEGDAEVNIKEENQFEDQEDDGGER*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
