Glyma18g51030 - SoyBase

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Report for Sequence Feature Glyma18g51030

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59992998
stop:	59995136
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g51030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23880	AT	Annotation by Michelle Graham. TAIR10: F-box and associated interaction domains-containing protein \| chr3:8622061-8623155 REVERSE LENGTH=364	SoyBase	E_val: 3.00E-29	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00646	PFAM	F-box domain	JGI		ISS
PF07734	PFAM	F-box associated	JGI		ISS
UniRef100_D3YBB5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Galactose oxidase n=1 Tax=Trifolium repens RepID=D3YBB5_TRIRP	SoyBase	E_val: 1.00E-62	ISS
UniRef100_I1N4R9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4R9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g51030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g51030

Paralog	Evidence	Comments
Glyma08g27941	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g51030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g274900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g51030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g51030

Limit To All Plant Sequences

>Glyma18g51030.2   sequence type=CDS   gene model=Glyma18g51030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAACGACACTCAGACTCTCCCTCTGGAGTTGATCATAGAAATTCTGATGAGATTGCCAGTGAGATCTGTTTTGGGTTTCAAGTGTGTCTGTAAATCATGGTTTTCTCTTATTTCCGATCCCCAATTCGGTATTTCACATTTTGATCTGGCTGCCTCACCCACCCACCGACTTCTTCAGAGATGTAATCATTTTTACGCTGAATCCATTGACACAGAGGCACCACTTAAGAAATATTCTAGTGCAGTGCATTTCCTTCTCCCCCCTCCATCACCCCCACACCATGGTGAATACGACAATTACGCTGATTATCAGGATAAACATGAGATCTTGGGATCATGCAGAGGCCTCGTACTTTTATACTATAAGAGATACTGTGATCTCATTCTATGGAATCCATCAATAGGTGCCCACAAACGATCACCAAACTTTGCATATGATATAACCTTTCAATTTCTATATGGCTTTGGGTATGACCCATCAACAGATGAGTACCTGCTAATGATGATTGGATTGTATGAGTCTGGAAATTACAAGTATGATAATGGTAACGAGTCTGAAGATCATGAATGCAAAGGTAACTATCAGATTTTCTCTTTCAAAACTGATTCCTGGTATATCGATGATGTCTTTGTTCCATACAAGGATCTTGGTGATAAATTCAGAGCCGGGTCACTCTTCGATGAGACTCTTCACTGGTTGGTTTTCTCCGAGGATAAAAAGATTCCTGTCATTCTAGCCTTTGATCTGATACTAAGGAGTTTCTCAGAGATTCCTCTATTTGATCATTTTACTATGGAGAAATATGAAATTTACAGTTTGAGGGTGATGGGAGGATGTCTCTGCGTGTGTTGCTTGGTCCAAGGCTATGAAAATGCTGAAATATGGGTGATGAAAGAATATAAAGTGCAGTCATCTTGGACTAAATCCATTGTTATCCCTACTAGCGGATTTTCCCCGCTACGCATCACCAAAGATGGTGGAATTCTTGGATCAAATACCTGTGGAAGATTAGAGAAACTTAATTACAAAGGAGAGCTGCATGAGCATCTCAATTATGGTGGAGGTCAATGGTTGTACTCTGCCAATCTACAGTCTGCTGTGTATAGAGAGAGTCTACTCTCACTCCCCAGTGTTGTTCGGGTACCAAGTAAAGATGATCATGGGAAAACAAGTGAAGATGACCAACAATAA

Predicted protein sequences of Glyma18g51030

Limit To All Plant Sequences

>Glyma18g51030.2   sequence type=predicted peptide   gene model=Glyma18g51030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNDTQTLPLELIIEILMRLPVRSVLGFKCVCKSWFSLISDPQFGISHFDLAASPTHRLLQRCNHFYAESIDTEAPLKKYSSAVHFLLPPPSPPHHGEYDNYADYQDKHEILGSCRGLVLLYYKRYCDLILWNPSIGAHKRSPNFAYDITFQFLYGFGYDPSTDEYLLMMIGLYESGNYKYDNGNESEDHECKGNYQIFSFKTDSWYIDDVFVPYKDLGDKFRAGSLFDETLHWLVFSEDKKIPVILAFDLILRSFSEIPLFDHFTMEKYEIYSLRVMGGCLCVCCLVQGYENAEIWVMKEYKVQSSWTKSIVIPTSGFSPLRITKDGGILGSNTCGRLEKLNYKGELHEHLNYGGGQWLYSANLQSAVYRESLLSLPSVVRVPSKDDHGKTSEDDQQ*

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