Glyma18g50990 - SoyBase

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Report for Sequence Feature Glyma18g50990

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59972069
stop:	59974299
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06240	AT	Annotation by Michelle Graham. TAIR10: F-box family protein \| chr3:1887336-1888619 FORWARD LENGTH=427	SoyBase	E_val: 5.00E-25	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_G7IX79	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box protein n=1 Tax=Medicago truncatula RepID=G7IX79_MEDTR	SoyBase	E_val: 5.00E-48	ISS
UniRef100_I1N4R6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4R6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g50990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g50990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g274500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g50990

Limit To All Plant Sequences

>Glyma18g50990.2   sequence type=transcript   gene model=Glyma18g50990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTCAAAGTAAGAAGAAAATGAACCCCATTTTCTGTCATCTGATGACAGTAGAAATTTTATTGAGGAGCATCAAGGAATCCAAGTCAAGTTAAACGTTGGAGAACCCGTATAAGAGCAACGAGCATGGAAAATCACACTCTCCCTATGGAGTTGATGAGAGAAATTCTTCTAAGATTGCCTGTGAGATCTGTTTCGCGTTGCAAGTGCGTGTGTAAGTCATGGAATTTTATCATCTCCAATCCTCAATTTGGCAATTCCCATTATGATCTCGATGCCACACCCTCCCATAGACTCATTCTCAGATCAAACTATTCTTCTCATGGAGTTCTATCCATTGATACAAATGCACCACTAGACACATGTTCTGCTGCAAAGCATTTGATTCTCCCCCTTCATTCATCCCCATGCAATCCCTACGACAATGAAGATTATGATGGTTTTCCCCGTAGACCCGAGATTTTAGGTTCGTGCAGAGGGTTTATACTTTTATATTACAAGATGAATCGAGATCTTATTATATGGAATCCATTGACAAGAGACCGTAAACTATTTCTTAACTCTGAATTTATGTTAACCTTTCGATTTTTATATGGTTTTGGGTATGACACATCAACAGATGACTACTTGCTAATATTGATCAGATTATCCTTGGAAACAGCTGAAATCCAAGTTTTCTCTTTCAAAACTAATCGCTGGAACAGAGACAAGATAGAAATTAATGTTCCATATTATTCTAATTTAGATCGGAAATTCAGTATGGGGTTATTCTTCAATGATGCTCTTTATTGGGTAGTTTTCTCTATGTACCAAAGGGTTTTTGTGATTATTGCCTTTGATTTGGTAAAAAGGAGTTTATCAGAGATTCCTCTATTTGATAATTTAACTATGAAAAACACTTCAGATGATTTAACTATGAAAATCCCTGAAGTGTTAAGTTTAAGAGTAATAGGAGGATGTCTCTGTGTGTGTTGTTTGGTCCAATACTGGGCAATGCCCGAAATATGGGTGATGAAAGAATCATCTTGGACTAAGTGGTTTGTAATCCCTTATGACTTTTCCCCAATATGCATCACAAAAGATGGAGGAATTTTGGGATTAAATATTAGAGAAAGATTAGAGAAATATAATAACAAAGGAGAGTTGTTTGAGCATTTCACCATTGTTGCTGCTGAAGGTGAAGAGTACTACTGTTCCTTACGAGATCAACAGTCTGCTATGTATAGAGAGAGTCAACTATCGCTCCCCTGACAACAAAAATCAGGGTATGCATTGTTCTCCAATCCCTTTCACCATTATATTCTTATTCACCTTGTAATATGCTCATTGTTTGGTATGTGATCGAAAAATCATGATTTCACC

Coding sequences of Glyma18g50990

Limit To All Plant Sequences

>Glyma18g50990.1   sequence type=CDS   gene model=Glyma18g50990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAATCACACTCTCCCTATGGAGTTGATGAGAGAAATTCTTCTAAGATTGCCTGTGAGATCTGTTTCGCGTTGCAAGTGCGTGTGTAAGTCATGGAATTTTATCATCTCCAATCCTCAATTTGGCAATTCCCATTATGATCTCGATGCCACACCCTCCCATAGACTCATTCTCAGATCAAACTATTCTTCTCATGGAGTTCTATCCATTGATACAAATGCACCACTAGACACATGTTCTGCTGCAAAGCATTTGATTCTCCCCCTTCATTCATCCCCATGCAATCCCTACGACAATGAAGATTATGATGGTTTTCCCCGTAGACCCGAGATTTTAGGTTCGTGCAGAGGGTTTATACTTTTATATTACAAGATGAATCGAGATCTTATTATATGGAATCCATTGACAAGAGACCGTAAACTATTTCTTAACTCTGAATTTATGTTAACCTTTCGATTTTTATATGGTTTTGGGTATGACACATCAACAGATGACTACTTGCTAATATTGATCAGATTATCCTTGGAAACAGCTGAAATCCAAGTTTTCTCTTTCAAAACTAATCGCTGGAACAGAGACAAGATAGAAATTAATGTTCCATATTATTCTAATTTAGATCGGAAATTCAGTATGGGGTTATTCTTCAATGATGCTCTTTATTGGGTAGTTTTCTCTATGTACCAAAGGGTTTTTGTGATTATTGCCTTTGATTTGGTAAAAAGGAGTTTATCAGAGATTCCTCTATTTGATAATTTAACTATGAAAAACACTTCAGATGATTTAACTATGAAAATCCCTGAAGTGTTAAGTTTAAGAGTAATAGGAGGATGTCTCTGTGTGTGTTGTTTGGTCCAATACTGGGCAATGCCCGAAATATGGGTGATGAAAGAATCATCTTGGACTAAGTGGTTTGTAATCCCTTATGACTTTTCCCCAATATGCATCACAAAAGATGGAGGAATTTTGGGATTAAATATTAGAGAAAGATTAGAGAAATATAATAACAAAGGAGAGTTGTTTGAGCATTTCACCATTGTTGCTGCTGAAGGTGAAGAGTACTACTGTTCCTTACGAGATCAACAGTCTGCTATGTATAGAGAGAGTCAACTATCGCTCCCCTGA

>Glyma18g50990.2   sequence type=CDS   gene model=Glyma18g50990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAATCACACTCTCCCTATGGAGTTGATGAGAGAAATTCTTCTAAGATTGCCTGTGAGATCTGTTTCGCGTTGCAAGTGCGTGTGTAAGTCATGGAATTTTATCATCTCCAATCCTCAATTTGGCAATTCCCATTATGATCTCGATGCCACACCCTCCCATAGACTCATTCTCAGATCAAACTATTCTTCTCATGGAGTTCTATCCATTGATACAAATGCACCACTAGACACATGTTCTGCTGCAAAGCATTTGATTCTCCCCCTTCATTCATCCCCATGCAATCCCTACGACAATGAAGATTATGATGGTTTTCCCCGTAGACCCGAGATTTTAGGTTCGTGCAGAGGGTTTATACTTTTATATTACAAGATGAATCGAGATCTTATTATATGGAATCCATTGACAAGAGACCGTAAACTATTTCTTAACTCTGAATTTATGTTAACCTTTCGATTTTTATATGGTTTTGGGTATGACACATCAACAGATGACTACTTGCTAATATTGATCAGATTATCCTTGGAAACAGCTGAAATCCAAGTTTTCTCTTTCAAAACTAATCGCTGGAACAGAGACAAGATAGAAATTAATGTTCCATATTATTCTAATTTAGATCGGAAATTCAGTATGGGGTTATTCTTCAATGATGCTCTTTATTGGGTAGTTTTCTCTATGTACCAAAGGGTTTTTGTGATTATTGCCTTTGATTTGGTAAAAAGGAGTTTATCAGAGATTCCTCTATTTGATAATTTAACTATGAAAAACACTTCAGATGATTTAACTATGAAAATCCCTGAAGTGTTAAGTTTAAGAGTAATAGGAGGATGTCTCTGTGTGTGTTGTTTGGTCCAATACTGGGCAATGCCCGAAATATGGGTGATGAAAGAATCATCTTGGACTAAGTGGTTTGTAATCCCTTATGACTTTTCCCCAATATGCATCACAAAAGATGGAGGAATTTTGGGATTAAATATTAGAGAAAGATTAGAGAAATATAATAACAAAGGAGAGTTGTTTGAGCATTTCACCATTGTTGCTGCTGAAGGTGAAGAGTACTACTGTTCCTTACGAGATCAACAGTCTGCTATGTATAGAGAGAGTCAACTATCGCTCCCCTGA

Predicted protein sequences of Glyma18g50990

Limit To All Plant Sequences

>Glyma18g50990.1   sequence type=predicted peptide   gene model=Glyma18g50990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENHTLPMELMREILLRLPVRSVSRCKCVCKSWNFIISNPQFGNSHYDLDATPSHRLILRSNYSSHGVLSIDTNAPLDTCSAAKHLILPLHSSPCNPYDNEDYDGFPRRPEILGSCRGFILLYYKMNRDLIIWNPLTRDRKLFLNSEFMLTFRFLYGFGYDTSTDDYLLILIRLSLETAEIQVFSFKTNRWNRDKIEINVPYYSNLDRKFSMGLFFNDALYWVVFSMYQRVFVIIAFDLVKRSLSEIPLFDNLTMKNTSDDLTMKIPEVLSLRVIGGCLCVCCLVQYWAMPEIWVMKESSWTKWFVIPYDFSPICITKDGGILGLNIRERLEKYNNKGELFEHFTIVAAEGEEYYCSLRDQQSAMYRESQLSLP*

>Glyma18g50990.2   sequence type=predicted peptide   gene model=Glyma18g50990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENHTLPMELMREILLRLPVRSVSRCKCVCKSWNFIISNPQFGNSHYDLDATPSHRLILRSNYSSHGVLSIDTNAPLDTCSAAKHLILPLHSSPCNPYDNEDYDGFPRRPEILGSCRGFILLYYKMNRDLIIWNPLTRDRKLFLNSEFMLTFRFLYGFGYDTSTDDYLLILIRLSLETAEIQVFSFKTNRWNRDKIEINVPYYSNLDRKFSMGLFFNDALYWVVFSMYQRVFVIIAFDLVKRSLSEIPLFDNLTMKNTSDDLTMKIPEVLSLRVIGGCLCVCCLVQYWAMPEIWVMKESSWTKWFVIPYDFSPICITKDGGILGLNIRERLEKYNNKGELFEHFTIVAAEGEEYYCSLRDQQSAMYRESQLSLP*

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