Report for Sequence Feature Glyma18g50960
Feature Type: gene_model
Chromosome: Gm18
Start: 59953246
stop: 59962703
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g50960
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G38880 AT
Annotation by Michelle Graham. TAIR10: unknown protein; Has 474 Blast hits to 433 proteins in 138 species: Archae - 6; Bacteria - 80; Metazoa - 195; Fungi - 44; Plants - 59; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). | chr5:15563621-15568804 REVERSE LENGTH=796
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005876 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: spindle microtubule
SoyBase N/A ISS
GO:0051011 GO-mf
Annotation by Michelle Graham. GO Molecular Function: microtubule minus-end binding
SoyBase N/A ISS
UniRef100_I1N4R3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4R3_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q2HSE5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: IMP dehydrogenase/GMP reductase, putative n=1 Tax=Medicago truncatula RepID=Q2HSE5_MEDTR
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g50960
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g50960
Paralog Evidence Comments
Glyma08g27740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g50960 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g274100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g50960
Coding sequences of Glyma18g50960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g50960.1 sequence type=CDS gene model=Glyma18g50960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAGAGCGCAGCGTCATCGTCGCCGTCGCCGGAGGCCATTCTGGAATGGCTGCACAAAGAAATGGGCTACCGTCCGCTCGGCACCTACGCCTCCGGCAAGTCGCACCTGCCGTCCGTCGACTCCATCCGCCGGATTTGCCGCGGCAACATGATTCCGGTCTTGAACTTCCTCGTCACGCGCGCCAAGTCCGAGAAGACCGTGCGGAACATCCGCCGGAACATCACCGTGCACGGCGGCGCAGACGGCGGCGGAGAGGCGAAGGAGGAGGGAAGGGGGAAGGGCGCGAGGAAGAAGGAGAGGGCGCTCGCCGGCGGCGGCGAGGGTTCCGAGACTGCGACGACGAGGGAGGCGGCGTTGCAAGAGCGGGATTTGGCCGCGAAGGAGGTGGACAGGCTGAGGAAAGTCGTGAGGAGGCAGAAGAAGGATTTGAGAGCGAGGATGCTCGAGGTTTCCAGAGAGGAGGCTGAGAGGAAGAGAATGCTCGATGAACGAGCCAATTACAGGCATAAGCAAGTGATGTTGGAGGCCTATGATCGACAATGTGATGAGGCTGCAAAAATATTTGCTGAATATCATAAACGTCTCTGTTACTATGTAAATCAAGCGATGGATTCTCAAAGATCGGGTGTGGATTCTTCTGTTGAAATGGCCAAAAGTGAGAAGGAAGCTGTTTATTCTACTGTTAAGGGAAGTAAATCTGCAGATGATGTCATCCTCATTGAAACCACGAGGGAAAATAATATTAGAAAGGCCTGTGAATCTCTTGTAGACCACATGATGGAAAAAATACGGAGTTCTTTTCCTGCTTATGAAGGAAGTGGCATTCATTTAAATCCTCAAGCAGAAACAGCAAAATTGGGGTTTGACTTTGATGGGCAAATTCCTGATGAGGTCAGAACTGTTATTATAAATTGCCTAAAGAGTCCTCCCCAATTGCTTCAGGCAATTACTGCATACACTTTGCGGCTGAAAAGTCTAATCTCCAGAGAAATAGAGAAAATTGATGTTAGAGCCGATGCAGAGACCTTGAGGTACAAATATGAAAATAACATTGTTATGGATGTTTCATCATCCGATGGGAGCTCTCCTCTACAGTATCAACTTTATGGCAATGGAAAGATTGGGGTTGATGTGCCTCCAGGAGGGAGTCAAAATCAGCTTCTTGATAGACAGAAAGCTCATGTTCAACAATTTTTGGCTACTGAAGATGCACTAAACAAAGCTGCAGAAGCAAGGGACATGTGTGAAAAACTTATGAAACGTTTGCATGGAGGCACTGATGTTTCGTCACGCTCACTTGGTATTGGAAGTAATTCCCAAAATGTTGGAAGTCTCAGGCAACTTGAGCTAGATGTTTGGGCCAAGGAAAGAGAAGTTGCTGGTTTAAAGGCAAGCTTAAACACCTTAATGTCTGAAATACAACGCTTGAATAAGTTGTGTGCTGAGAGGAAAGAAGCTGAAGATTCTCTAAAGAAAAAATGGAAAAAGATTGAAGAGTTTGATGCTCGTAGATCAGAACTTGAGACTATATATATGGCACTCCTTAAAGCAAATATGGATGCTGCTTCATTTTGGAGTCAGCAACCATTAACTGCAAGGGAGTATGCTTTGAGCACTATAATTCCAGCATGTGCTGCTGTTGCCAAGGCTTCAAATAATGCAAAGGATCTCATTGAGAAAGAAGTGTCTACATTTTATCGAAGTCCAGATAATAGTCTCTACATGCTTCCTTCTTCCCCACAGGCACTGCTTGAGGCCATGGGTGCTAGTGGACCACCTGGCCAGGAAGCAGTTGCAAATGCAGAAATAAGTGCAGCTATGTTGACAGCAAGAGCTGGTGCTCGGGATCCATCAGCAATTCCATCAATATGTCGCGTTTCAGCTGCACTTCACTATCCTGCGGGCTTGGAGGGTTCAGATGCTGGTCTAGCATCTGTGCTGGAGTCCCTGGAGTTCTGTTTGAAACTTCGTGGTTCTGAAGCTAGTGTGTTGGAAGATTTATTAAGGGCTATTAATCTTGTCTATATTAGACGGGATCTTGTTCAAAGTGGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAAGACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCATGGAAGAATGGTTGCCTGAACTTAAGAATGCTGTTTTGAGTGCTCAGCAGAGCTTGGAAGATTGCAAATATGTCAGGGGATTGCTTGATGAGTGGTGGGAGCAGCCAGCATCGACAGTTGTTGACTGGGTAACAGTGGATGGGCAAAATGTAACTGCCTGGCATAATCATGTGAAACAGCTTCTGGCATTTTGTGACAAGGAGCTATTGTGA
Predicted protein sequences of Glyma18g50960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g50960.1 sequence type=predicted peptide gene model=Glyma18g50960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQSAASSSPSPEAILEWLHKEMGYRPLGTYASGKSHLPSVDSIRRICRGNMIPVLNFLVTRAKSEKTVRNIRRNITVHGGADGGGEAKEEGRGKGARKKERALAGGGEGSETATTREAALQERDLAAKEVDRLRKVVRRQKKDLRARMLEVSREEAERKRMLDERANYRHKQVMLEAYDRQCDEAAKIFAEYHKRLCYYVNQAMDSQRSGVDSSVEMAKSEKEAVYSTVKGSKSADDVILIETTRENNIRKACESLVDHMMEKIRSSFPAYEGSGIHLNPQAETAKLGFDFDGQIPDEVRTVIINCLKSPPQLLQAITAYTLRLKSLISREIEKIDVRADAETLRYKYENNIVMDVSSSDGSSPLQYQLYGNGKIGVDVPPGGSQNQLLDRQKAHVQQFLATEDALNKAAEARDMCEKLMKRLHGGTDVSSRSLGIGSNSQNVGSLRQLELDVWAKEREVAGLKASLNTLMSEIQRLNKLCAERKEAEDSLKKKWKKIEEFDARRSELETIYMALLKANMDAASFWSQQPLTAREYALSTIIPACAAVAKASNNAKDLIEKEVSTFYRSPDNSLYMLPSSPQALLEAMGASGPPGQEAVANAEISAAMLTARAGARDPSAIPSICRVSAALHYPAGLEGSDAGLASVLESLEFCLKLRGSEASVLEDLLRAINLVYIRRDLVQSGEALLNHANLVQQEYEKTTKFCLSKAEEQEKTIMEEWLPELKNAVLSAQQSLEDCKYVRGLLDEWWEQPASTVVDWVTVDGQNVTAWHNHVKQLLAFCDKELL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
