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Report for Sequence Feature Glyma18g50940

Feature Type:gene_model
Chromosome:Gm18
Start:59939088
stop:59942351
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g50940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G38900AT Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein | chr5:15573745-15574945 REVERSE LENGTH=217 SoyBaseE_val: 2.00E-104ISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009817GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0015035GO-mf Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity SoyBaseN/AISS
PF01323PFAM DSBA-like thioredoxin domain JGI ISS
UniRef100_C6T5E5UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T5E5_SOYBN SoyBaseE_val: 2.00E-156ISS
UniRef100_G7KR18UniRef Annotation by Michelle Graham. Most informative UniRef hit: DSBA-like thioredoxin domain containing protein n=3 Tax=Medicago truncatula RepID=G7KR18_MEDTR SoyBaseE_val: 9.00E-134ISS

Expression Patterns of Glyma18g50940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g50940 not represented in the dataset
Glyma18g50940 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50940
ParalogEvidenceComments
Glyma08g27720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g273900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g50940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g50940
>Glyma18g50940.1   sequence type=CDS   gene model=Glyma18g50940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGGGACTTCGGAAAAGAAACTTGTAAGAATCGATGTTAGTTCTGATACTGTATGCCCATGGTGCTTTGTTGGCAAAAAAAATCTAGACAAGGCCATAGCTGCCTCCAAGGATAAATACAACTTTGAGATAATATGGCATCCCTTTCAACTTAGCCCTGATGCCCCTAAAGAAGGCATTGACAAGAGGGAGTATTACAGAAGAAAATTTGGATCTCAATCAGAACGGATGGAAGCTCGGATGTCAGAGGTGTTCAAGAATGTTGGCTTGGAATATAGCTTGTCTGGACTCACGGGAAACACTATTGACAGCCACAGGCTTATATATTTTGCTAGGCAGCAGGGTCTTGACAAGCAACATGATCTAGTTGAAGAACTTAACATTGGCTATTTCACACAGGGAAAATACATTGGTGACCATAAGTTTCTTCTGGAATCTGCTGCAAAGGTTGGTATAGAAGGAGCAGAAGAGTTTCTTAAGGACCCCAACAATGGTTTGAAGGAGGTTGAGGAGGAGCTCAAAACTTACTCAGGAAACATTTCAGGGGTTCCATATTACGTGATTAATGGGAATCACAAGTTGAGTGGTGGACAACCCCCTGAAGTCTTCTTGAGAGCTTTTCAAGTTGCTACAAATTAG
Predicted protein sequences of Glyma18g50940
>Glyma18g50940.1   sequence type=predicted peptide   gene model=Glyma18g50940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGTSEKKLVRIDVSSDTVCPWCFVGKKNLDKAIAASKDKYNFEIIWHPFQLSPDAPKEGIDKREYYRRKFGSQSERMEARMSEVFKNVGLEYSLSGLTGNTIDSHRLIYFARQQGLDKQHDLVEELNIGYFTQGKYIGDHKFLLESAAKVGIEGAEEFLKDPNNGLKEVEEELKTYSGNISGVPYYVINGNHKLSGGQPPEVFLRAFQVATN*






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