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Report for Sequence Feature Glyma18g50881

Feature Type:gene_model
Chromosome:Gm18
Start:59885423
stop:59887065
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g50881
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G30210AT Annotation by Michelle Graham. TAIR10: myb domain protein 121 | chr3:11838567-11840313 FORWARD LENGTH=276 SoyBaseE_val: 4.00E-60ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
KOG0048 KOG Transcription factor, Myb superfamily JGI ISS
PTHR10641Panther MYB-RELATED JGI ISS
PTHR10641:SF30Panther MYB-RELATED TRANSCRIPTION FACTOR JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_D7LP24UniRef Annotation by Michelle Graham. Most informative UniRef hit: MYB121 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LP24_ARALL SoyBaseE_val: 8.00E-61ISS
UniRef100_UPI000233F270UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F270 related cluster n=1 Tax=unknown RepID=UPI000233F270 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g50881
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g50881 not represented in the dataset
Glyma18g50881 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50881
ParalogEvidenceComments
Glyma08g27660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50881 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g273300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g50881
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g50881
>Glyma18g50881.1   sequence type=CDS   gene model=Glyma18g50881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGCTATGAAGGGTTCACTTGCAACGCAGAAAGAGTGGAGGAAAGGCCCTTGGATTGGTGAAGAGGATAAGTTGCTATGTGAGTATGTTAGCTTGCATGGAGAAGGTAGGTGGAGTTCGGTGGCAAAGCTTACAGGATTAAACAGGAGCGGCAAAAGCTGCAGGTTAAGATGGGTAAATTATTTGAGACCCGGCCTCAAGAAAGCTCAATTAACACCTCGGGAAGAAGAGATGATTATTGAACTGCATGCAATCTTGGGTAACAAGTGGTCTACAATCGCAAAGTACTTGCCAGGTAGAACTGATAACGAAATTAAGAACTACTGGAGAACCCACTCTGGGAAGAGGGAGAGATCCAAACACAACAAGAAGCTACAAAGGCCAAAAGTGAAAAACGTGCTTAAACAATTGAAACAAAAACAACAACATGAGCAACAACCTCAAGAATATGATATCAAAAGCAGCATGTCTCATGAAGAGACCGAAAACGAAACAAAATCCTTCCACACACAAAATAATAATCAGCAAGAAATCTTAGAAATGGGCTTCATGTATCCAACAACAATAGAGCACCAATATACCGTTCCTTCCATGCATGACGGATTCTCGTCCACGTGGCAAGACACTCTAGCGGATGATGGCTCATGGTTTAGTTTATGGGACTTTGATGAACCACAAGGTTTTTCTGATTATGTTGACCAGTTTGGCAAATGTGCCATGCCAAATCAAACTTCCTTTGGAGCTGGAGGGGATTATTCCATGCAAAATCATGTTAAAACTTCTTGTTTTGTTGATACATATGATAGCCTCTTCTATGGAAAAGACATGTTTGTATGA
Predicted protein sequences of Glyma18g50881
>Glyma18g50881.1   sequence type=predicted peptide   gene model=Glyma18g50881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAMKGSLATQKEWRKGPWIGEEDKLLCEYVSLHGEGRWSSVAKLTGLNRSGKSCRLRWVNYLRPGLKKAQLTPREEEMIIELHAILGNKWSTIAKYLPGRTDNEIKNYWRTHSGKRERSKHNKKLQRPKVKNVLKQLKQKQQHEQQPQEYDIKSSMSHEETENETKSFHTQNNNQQEILEMGFMYPTTIEHQYTVPSMHDGFSSTWQDTLADDGSWFSLWDFDEPQGFSDYVDQFGKCAMPNQTSFGAGGDYSMQNHVKTSCFVDTYDSLFYGKDMFV*






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