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Report for Sequence Feature Glyma18g50833

Feature Type:gene_model
Chromosome:Gm18
Start:59851578
stop:59852943
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g50833
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G28680AT Annotation by Michelle Graham. TAIR10: Malectin/receptor-like protein kinase family protein | chr5:10719437-10722013 REVERSE LENGTH=858 SoyBaseE_val: 3.00E-63ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0051510GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016324GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane SoyBaseN/AISS
GO:0090404GO-cc Annotation by Michelle Graham. GO Cellular Compartment: pollen tube tip SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_C6TDE3UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TDE3_SOYBN SoyBaseE_val: 1.00E-168ISS
UniRef100_Q69F91UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine-threonine kinase n=1 Tax=Phaseolus vulgaris RepID=Q69F91_PHAVU SoyBaseE_val: 2.00E-163ISS

Expression Patterns of Glyma18g50833
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g50833 not represented in the dataset
Glyma18g50833 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g50833 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g272800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g50833
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g50833
>Glyma18g50833.1   sequence type=CDS   gene model=Glyma18g50833   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCTAAAATGTTTTGGCCACTCAAGTTCATCACAGAGACAGTATCCAACAATAATAGAAGAGCTGTGCCATCAATTTTCTCTTGCCGATCTTGGGAAATCAACCAACAACTTTGATCAAAACAGAGTTATTGGGCGTGGAGCATTTAGTACGGTATACAAAGGTTGTCTCCAACATAAAGATGGTTCTGATTATACAGTCGCATTAAAACGGTTTCATGAAGGATACAGTGCAGTGTTCAAGAAAGAAATAGAGTTGCTCTGCCAGCTTCGCCACCCTAATTGTGTTTCTCTTATTGGATTCTGCAACCATGAGAAAGAGAAGATTATTGTCTACGAGTACATGTCCAATGGATCTCTAGATAGACACCTACTACGTGGGAAACTGTCATGGAAAAAAAGGGTAGAGATTTGCATAGGAGTAGCGTGTGGATTACACTACCTTCATGCTGGAGCCAAGCGCTCCATCTTTCATTGTATCCTCAGAGCCAGTACCATTCTTTTGGATGAAGACAAGGAGCCAAAACTCGCAGGATTCGGCCTTAGCATACAGGGACCGCAATTTAATTCGAAGAAGCCGAAACAAATTAATGCAGATCATATTATGGATACTCTTGGTTACATGCCTTTGGAGTATGTCATGAATGGTTCTGTCACTGATAAATGGGATGTTTTCTCATTTGGTTTGGTTCTGCTACGAGTTGTGTGTGGAATGGATTATTTCATAATGGCAGCAGAGAGGAAACTTATGGAGAAGCCTGTTGAAGAGAATATTGATTCGAATATCAAAGGAAAGATTGCACCGGAGTGTTGGCAAGTCTTTATAGATATCATGGTCAGATGCTTGGAGTATGAACCAGATGAGCGACCAGCAATGGGTGAAGTGGAGGTGGAACTTGAGCATGCTCTGTCGCTGCAGGAACAAGCAGATATCACAAACACTGATGGTGATTATAACTTATTGTCCAAAACCATTATTCCCATTGCCCGTGGTAGTGAAATGAAAGAGTAA
Predicted protein sequences of Glyma18g50833
>Glyma18g50833.1   sequence type=predicted peptide   gene model=Glyma18g50833   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFLKCFGHSSSSQRQYPTIIEELCHQFSLADLGKSTNNFDQNRVIGRGAFSTVYKGCLQHKDGSDYTVALKRFHEGYSAVFKKEIELLCQLRHPNCVSLIGFCNHEKEKIIVYEYMSNGSLDRHLLRGKLSWKKRVEICIGVACGLHYLHAGAKRSIFHCILRASTILLDEDKEPKLAGFGLSIQGPQFNSKKPKQINADHIMDTLGYMPLEYVMNGSVTDKWDVFSFGLVLLRVVCGMDYFIMAAERKLMEKPVEENIDSNIKGKIAPECWQVFIDIMVRCLEYEPDERPAMGEVEVELEHALSLQEQADITNTDGDYNLLSKTIIPIARGSEMKE*






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