Glyma18g50490 - SoyBase

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Report for Sequence Feature Glyma18g50490

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59606647
stop:	59609961
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13680	AT	Annotation by Michelle Graham. TAIR10: PLC-like phosphodiesterases superfamily protein \| chr1:4690409-4692702 FORWARD LENGTH=346	SoyBase	E_val: 6.00E-164	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004629	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipase C activity	SoyBase	N/A	ISS
GO:0008081	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity	SoyBase	N/A	ISS
UniRef100_B9SYD4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase C, putative n=1 Tax=Ricinus communis RepID=B9SYD4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F268	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F268 related cluster n=1 Tax=unknown RepID=UPI000233F268	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g50490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g50490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g269700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g50490

Limit To All Plant Sequences

>Glyma18g50490.2   sequence type=CDS   gene model=Glyma18g50490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCTCTTCCGGGCTTGCTTGTGGTTATTCTTCCACTTTTTTACAATGTTGCAGCTGCTTGTTCTGATGGAACGTGCAAGCTTCTTGATGAGTGCTCGTCCGATGGAGATTGTGGCACTGGGCTCTATTGCTTTTCCTGTCCATTTGGGTTTTTAGGCTCTAGGTGTGTGAGATCTACTGTCACAAATCAATTCAAGCTCATAAATAATTCTCTGCCATTCAACAAATATGCATTTTTGACAACGCACAACGCTTATGCCATTGATGGGGAGCCATCTCACACAGGCGTGCCACGAGTAACTTTTACCAATCAGGAAGACAGTGTCACCCAACAGCTAAATAATGGAGTACGTGGACTAATGCTAGATACATATGATTTTGACGGAGATGTGTGGTTATGCCATTCATTTGAAGGCCAATGCCATGACTTCACAGCTTTTGAACCTGCCCTAGACACATTGAAGGAAATTGAAGCTTTTCTATCAGCAAATCCAACAGAAATTGTCACACTCATCTTGGAAGATTATGTTCATGCACCAAATGGTTTGACAAAGGTCTTCACTGATGCCGGTCTGATGAAGTATTGGTTTCCATTGACAAGCATGCCAAGAAATGGTCAAGATTGGCCTCTAGTGAGTGATATGGTTGCCAAAAACCAAAGATTACTAGTGTTCACTTCTATTGCTTCTAAGGAACAAAGTGAAGGCATTGCTTACCAGTGGAATTTCATGGTTGAAAATCAGTATGGAGATGGTGGTAGAAAAGCAGGAAGTTGTCCAAATAGGGCAGAATCATCTCCCCTTAACGACAAAAGCAAATCCTTGGTGTTGGTAAACTATTTTCGATCAACTCCAATTAAACCAATCACATGTGAAGATAACTCAGGAGAACTAATTAACATGCTACAAACTTGTTTTGGTGCTGCTGGCAACCGGTGGGCCAATTTTGTTGCTGTTGATTATTATAAGAGGAGTGAGGGAGGAGGATCGTTTCAAGCAGTAGACACTCTCAATGGAAAGCTACTATGTGGATGTGATGATGTTCATACATGCGTGCCTGGATCAACATCAGAAGCTTGCTCTCAATCATAG

Predicted protein sequences of Glyma18g50490

Limit To All Plant Sequences

>Glyma18g50490.2   sequence type=predicted peptide   gene model=Glyma18g50490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSLPGLLVVILPLFYNVAAACSDGTCKLLDECSSDGDCGTGLYCFSCPFGFLGSRCVRSTVTNQFKLINNSLPFNKYAFLTTHNAYAIDGEPSHTGVPRVTFTNQEDSVTQQLNNGVRGLMLDTYDFDGDVWLCHSFEGQCHDFTAFEPALDTLKEIEAFLSANPTEIVTLILEDYVHAPNGLTKVFTDAGLMKYWFPLTSMPRNGQDWPLVSDMVAKNQRLLVFTSIASKEQSEGIAYQWNFMVENQYGDGGRKAGSCPNRAESSPLNDKSKSLVLVNYFRSTPIKPITCEDNSGELINMLQTCFGAAGNRWANFVAVDYYKRSEGGGSFQAVDTLNGKLLCGCDDVHTCVPGSTSEACSQS*

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