Glyma18g50460 - SoyBase

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Report for Sequence Feature Glyma18g50460

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59592869
stop:	59598118
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G50180	AT	Annotation by Michelle Graham. TAIR10: NB-ARC domain-containing disease resistance protein \| chr1:18584235-18587136 FORWARD LENGTH=857	SoyBase	E_val: 0	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0043531	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP binding	SoyBase	N/A	ISS
KOG4658	KOG	Apoptotic ATPase	JGI		ISS
PTHR23155	Panther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	JGI		ISS
PF00931	PFAM	NB-ARC domain	JGI		ISS
UniRef100_B9S717	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance protein RPP13, putative n=1 Tax=Ricinus communis RepID=B9S717_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N4M6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4M6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g50460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50460

Paralog	Evidence	Comments
Glyma08g27250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g269500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g50460

Limit To All Plant Sequences

>Glyma18g50460.1   sequence type=CDS   gene model=Glyma18g50460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAGGCAGTTGTGTCCTTTGCAGTTGAAAGGCTTCACGACCTACTTACGGAAGAGGCCAGATTGTTAATTGGGGTGAGTGACAAAGTCAAAAGGATGCAAAATGAACTAAAGAGGATGCAATGCTTCCTAAGAGATGCTGAGAGAAAGCAGGATAAAAATGATACTATAAAGAATTATATTTCAGAGGTGAGAAAACTAGCCTATGATGCAGAGGATGTGATAGAAATATATGCTATTAAGGTTGCATTAGGCATAAGTATTGGAACTAAAAATCCACTCACCAAAACTAAACATCTTCACAAAGTTGGCACTGAGCTCACATCAATAAATTCTCGAATTGATGACCTCACAAGAAGCCTACAAAACTATGGTTTTATTGCAACAGAAGACAATGAAGAGGTATCTGAGGTGCAAAGACAATTGCGATGGTCTTATTCTCACATAGTTGAAGAGTTCATTGTTGGCTTAGATAAGGACATAGACAAAGTGGTGGAATGGCTATTAAATGAAAATCATCATTGTCAATTTGTTTATATTTGTGGAATGGGTGGTCTTGGTAAAACTACACTTGCCAAAAGCATTTACCATTACAATGCTATTAGGCGAAACTTTGATGGTTTTGCTTGGGCATATATATCTCAGAAATGCAAGAAAAGAGATGTTTGGGAGGGAATTTTACTGAAGCTTATTTCTCCTACCAAAGAGGAAAGGGATGAGATTAAGAATATGACAGATGATGAACTGGCAAGGAAGTTGTTTAAAGTTCAGCAAGATAAAAAGTGTTTGATAATCCTGGATGACATATGGAGCAATGAGGCATGGGACATGTTAAGTCCTGCCTTTCCATCACAAAATACAAGGAGTAAGATAGTTTTTACATCCCGCAATAAAGACATTTCATTGCATGTAGATCCTGAAGGCTTGCTCCACGAACCAAGTTGCTTAAATCCAGAGGACAGTTGGGCATTGTTTAAGAAAAAAGCTTTTCCAAGACAAGATAACCCAGAATCCACGGTTTCTGATGAGTTTATAAGATTAGGCAGAGAAATGGTTGCAAAGTGTGCTGGTCTGCCTTTGACTATCATTGTTCTTGGAGGGCTTTTGGCTACAAAGGAGAGAGTTAGTGACTGGGCTACAATAGGAGGAGAGGTACGTGAAAAGCGAAAAGTAGAGGAAGTCTTGGATTTAAGTTACCAGGACTTGCCTTGTCAACTGAAACCATGTTTTCTCTATTTAAGTCAATTCCCTGAAGACTCTGAGATACCAAGAACTAAACTAATTCAGCTATGGGTAGCAGAAGGTGTTGTTTCATCTCAATATGAGACTGAACGGGATGAGACAATGGAGGATGTTGCAGAACGCTACCTAGGTAACTTAATTAGCCGCTGCATGGTTCAAGTTGGTCAGATGGGGTCTACTGGTAGGATTAAAACCTGTAGGCTCCATGATTTAATGCGTGATCTGTGTTTGTCAAAGGCCAGAAAAGAAAATTTTCTTTACATTATTAATGGATCACAACAAAATAGTACCATTGATGTTGCTTCTTCATCTAATTTATCAGATGCAAGACGAATTGATGAAGTTCGTAGGCTTGCTGTCTTCTTGGATCAACGTGTTGATCAATTGATTCCACAGGACAAGCAAGTGAATGAACACCTCAGGTCCCTTGTATTTTTTCACGACAAGAAGTGTAGGATGGAAAATTGGGACCTAGTGAAAGGTGTTTTTGTCGAGTTCAAATTACTTAGAGTTCTAGATCTTGAAGGAATTAAGGGGCTGAAGGGACAGTCATTGCCTAAAGAAGTGGGAAATCTTTTATGGTTGAAGTTTCTGAGTCTGAAAAGGACTCGCATACAAATACTGCCATCTTCCTTGGGAAATTTGGAGAATTTGCAATTCCTAAATTTGCAAACTGTCAATAAAGTGAGCTGGGATTCAACCGTGGAAATTCCAAATGTAATATGTAAGTTGAAACGGTTGAGGCATCTATATCTTCCAAATTGGTGTGGGAATGTTACTAACAACCTGCAACTAGAAAATTTGACCAATTTACAGACATTAGTAAATTTTCCTGCCAGCAAATGTGATGTAAAAGATCTATTGAAGCTGAAAAAACTCAGAAAGTTAGTACTGAATGACCCTAGACATTTTCAAAAATTTAGTGAAAGTTTCAGTCCCCCTAATAAAAGGTTGGATTGCCTTCTATCCTTGTCTTTAAGGACTGACATGCTTTCCTTCCCTGAAAATGTAGTAGATGTTGAAAAATTGGTGCTGGGCTGTCCTTTCCTCCGAAAATTGCAGGTCGAAGGGCGGATGGAAAGGCTGCCAGCAGCCTCACTGTTTCCTCCACAGCTTTCAAAGTTGACTTTATGGGGCTGTAGACTTGTGGAAGACCCAATGGTAACATTAGAGAAGCTTCCTAACTTGAAGTTTCTAAATGGGTGGGATATGTTTGTTGGAAAGAAAATGGCATGCTCACCAAATGGTTTTCCTCAACTGAAGGTTTTAGTACTTCGCGGCTTGCCTAATTTACATCAGTGGACAATAGAGGATCAAGCCATGCCCAATCTTTACCGATTGAGCATATCTGATTGCAACAATTTAAAGACGGTTCCTGATGGACTAAAATTTATCACTACTCTTCGGGAGCTAGAAATCAGATGGATGCCTAAATCATTCAAGACCAGGCTTGGAACTGCTGGGGAGGATTACCACAAAGTCCAACATGTGCCATCTATTGTATTTTTGAACTAA

Predicted protein sequences of Glyma18g50460

Limit To All Plant Sequences

>Glyma18g50460.1   sequence type=predicted peptide   gene model=Glyma18g50460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEAVVSFAVERLHDLLTEEARLLIGVSDKVKRMQNELKRMQCFLRDAERKQDKNDTIKNYISEVRKLAYDAEDVIEIYAIKVALGISIGTKNPLTKTKHLHKVGTELTSINSRIDDLTRSLQNYGFIATEDNEEVSEVQRQLRWSYSHIVEEFIVGLDKDIDKVVEWLLNENHHCQFVYICGMGGLGKTTLAKSIYHYNAIRRNFDGFAWAYISQKCKKRDVWEGILLKLISPTKEERDEIKNMTDDELARKLFKVQQDKKCLIILDDIWSNEAWDMLSPAFPSQNTRSKIVFTSRNKDISLHVDPEGLLHEPSCLNPEDSWALFKKKAFPRQDNPESTVSDEFIRLGREMVAKCAGLPLTIIVLGGLLATKERVSDWATIGGEVREKRKVEEVLDLSYQDLPCQLKPCFLYLSQFPEDSEIPRTKLIQLWVAEGVVSSQYETERDETMEDVAERYLGNLISRCMVQVGQMGSTGRIKTCRLHDLMRDLCLSKARKENFLYIINGSQQNSTIDVASSSNLSDARRIDEVRRLAVFLDQRVDQLIPQDKQVNEHLRSLVFFHDKKCRMENWDLVKGVFVEFKLLRVLDLEGIKGLKGQSLPKEVGNLLWLKFLSLKRTRIQILPSSLGNLENLQFLNLQTVNKVSWDSTVEIPNVICKLKRLRHLYLPNWCGNVTNNLQLENLTNLQTLVNFPASKCDVKDLLKLKKLRKLVLNDPRHFQKFSESFSPPNKRLDCLLSLSLRTDMLSFPENVVDVEKLVLGCPFLRKLQVEGRMERLPAASLFPPQLSKLTLWGCRLVEDPMVTLEKLPNLKFLNGWDMFVGKKMACSPNGFPQLKVLVLRGLPNLHQWTIEDQAMPNLYRLSISDCNNLKTVPDGLKFITTLRELEIRWMPKSFKTRLGTAGEDYHKVQHVPSIVFLN*

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