Glyma18g50440 - SoyBase

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Report for Sequence Feature Glyma18g50440

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59582545
stop:	59586849
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G28680	AT	Annotation by Michelle Graham. TAIR10: Malectin/receptor-like protein kinase family protein \| chr5:10719437-10722013 REVERSE LENGTH=858	SoyBase	E_val: 6.00E-74	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016324	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane	SoyBase	N/A	ISS
GO:0090404	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: pollen tube tip	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_C6ZRP3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine-threonine kinase n=1 Tax=Glycine max RepID=C6ZRP3_SOYBN	SoyBase	E_val: 5.00E-128	ISS
UniRef100_I1N4M3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N4M3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g50440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50440

Paralog	Evidence	Comments
Glyma08g27220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g269400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g50440

Limit To All Plant Sequences

>Glyma18g50440.1   sequence type=CDS   gene model=Glyma18g50440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTATTAAATATTTGGGCTTCTGCTGGTCGAAGCATGCAAGTTCATGTCAGAGGCAATATCCAACGGTGATAGAAGAGCTGTGCCATCAATTTTCATTGGCCGATATTAAGGAATCAACCAAAAAATTTGATGAAGACCAAATAATTGGAACTGGAGATTTTTGTATTGTATATAAAGGTTTTCTCCAAAACAATGGTGTTACTGATGATACAGTTGTAATCAAGCGAATACGTGGGAGCGGTGAGAAAGAGCTTAAGCAGTTCAAGAACGAAATTGAGTTGCTCTGCCAGCTTCGTCATCCAAATTTGATCACTCTATTAGGATTTTGTGTCCACAAAGACGAGAAGATTGTGGTATATGAGCACATGGCCAATGGATCTCTCCATGATCGACTATACTGTAGTGATGTGAAAAAGGAACCACTAACATGGAAGCATAGGCTAAAGATATGCATAGGAGCAGCACATGGACTACACTACCTTCACACAGGTGCCAAGCGAACCATCTTTCATCGTGACATAACACCTTATAAAATTCTTTTGGATAGAAACATGGTGGCCAAACTCGCGGATTTTCGGCTTTCCTTAAAAGGACCGCATTATGCATCAAAGCCAAAACCCAAGACAATATCAAAAGACGGCTTTATAGGTACATATGGTTATGTAGCTCCTGAGATTTCAGAAAACAATACATTAACAGAAAAATGCGATGTTTACTCCTTTGGTGTAGTGCTACTAGAAGTAGTATGCAAAGACAAGCTTAAAAATGTTGACAAGAGGCAGAAGCACCCTGTTGAGGAGAATATTGATCCGAATCTCAAAGGCAAGATTGCACCAGAGTGTTGGGAAGTATTTATTGATATCACAGAAAGATGCTTGAAGTTTGATCCAGATGAGCGGCCGGCAATGGGTGAAGTGGAGGTGCAACTTGAGCTTGCTCTCCCACCAAACCAGTCTCAGAAAAACGACGATCTCGAACTCGTTCAGCGTTGGATCGTCGTGAAATTTGAGTATCATGTTCGCAACACAATTCCGAGCATTCTCACCGTTGGGAATTTCGATATCATGTCTGAACTGAGAGAAACACCCTTCGCATTGTAG

Predicted protein sequences of Glyma18g50440

Limit To All Plant Sequences

>Glyma18g50440.1   sequence type=predicted peptide   gene model=Glyma18g50440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLIKYLGFCWSKHASSCQRQYPTVIEELCHQFSLADIKESTKKFDEDQIIGTGDFCIVYKGFLQNNGVTDDTVVIKRIRGSGEKELKQFKNEIELLCQLRHPNLITLLGFCVHKDEKIVVYEHMANGSLHDRLYCSDVKKEPLTWKHRLKICIGAAHGLHYLHTGAKRTIFHRDITPYKILLDRNMVAKLADFRLSLKGPHYASKPKPKTISKDGFIGTYGYVAPEISENNTLTEKCDVYSFGVVLLEVVCKDKLKNVDKRQKHPVEENIDPNLKGKIAPECWEVFIDITERCLKFDPDERPAMGEVEVQLELALPPNQSQKNDDLELVQRWIVVKFEYHVRNTIPSILTVGNFDIMSELRETPFAL*

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