Glyma18g50420 - SoyBase

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Report for Sequence Feature Glyma18g50420

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59567499
stop:	59572762
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29770	AT	Annotation by Michelle Graham. TAIR10: methyl esterase 11 \| chr3:11648471-11650565 FORWARD LENGTH=390	SoyBase	E_val: 8.00E-162	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1454	KOG	Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)	JGI		ISS
PTHR10992	Panther	ALPHA/BETA HYDROLASE RELATED	JGI		ISS
PTHR10992:SF202	Panther	HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN	JGI		ISS
PF00561	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_B9T5M4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Esterase PIR7B, putative n=1 Tax=Ricinus communis RepID=B9T5M4_RICCO	SoyBase	E_val: 6.00E-179	ISS
UniRef100_I1N4M1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4M1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g50420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50420

Paralog	Evidence	Comments
Glyma08g27210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g269200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g50420

Limit To All Plant Sequences

>Glyma18g50420.1   sequence type=CDS   gene model=Glyma18g50420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAATATCTGCGCTCGTTTGAAGTCGAAGCCGCCGCCGCAATCCTCAGCCAAGAAGCGTTCCTCTTCCCGCCGAGAGAGGAGGCTCGACGACGCCGCGATTCGCGAGCAGGCCATCGCCGCCGCGATTCTCTTCAAGCAGCACCAGCAACAGCAGCAATTCGATCGCTCCACTTCGCTTCGGTATCCGAATGGAGTCTCCAAGAAAAATAACAGCCACTGCTTGCCAAGGAGTTCGAGTTCCGGGGCAAGGTCCCTCACCGACCCTCTCCTTTTGCCACTCCAGCTTCACCTGCAGGGTGTGAATGTCGATGATCTTGAGACAAATCATATTGTCCTTGTTCACGGAGGTGGCTTCGGGGCCTGGTGTTGGTACAAATCCATAGCACTTCTAGAAGAAAGTGGTTACAAAGTAGCTGCCATAGATTTAACTGGTTCGGGCGTGAGTTCATTTGATACAAACATCATTACAAGTCTGTCACAATATGTGAAGCCACTTACTGACTTCCTTGAAAAACTTCCGGAAGGCAAAAAGGTTATCTTGGTTGGGCATGATTTTGGAGGGGCATGTATATCATATGCAATGGAGATGTTTCCTCTTAAGATTTCCAAGGCTGTCTTTGTTGCTGCAGCAATGTTGACTAGTGGTCAAAGTACTCTTGATATTATTTCTCAACAGGCAGGTTCAAATGATCTTATGCAACAAGCTCAGACTTTTATATATGCTAATGGGAATGATCACCCTCCCACTTCTTTTGATATGGACAAGTCATTATTGAGGGATTTGTTATTCAACCAAAGTCCCACCAAAGATATTGCACTAGCATCTGTCTCAATGAGGTCTGTACCATTTGCACCAGTTTTAGAGAAGGTTTCCCTTTCAGACCTGAAATATGGATCTGTAAGGCGGTTTTATATAGAAACTCTTGAAGACAATGCCATACCCATTTCACTCCAGGAGAACATGGTAAATGCAAACCCCCCAGAAAAGGTTTTCCGTCTGAAGGGAGCTGATCATTCTCCTTTCTTCTCTAAGCCTCAAGCGCTGCATAAGTTATTGGTAGAAATCTCAAAGATCCTCTAA

Predicted protein sequences of Glyma18g50420

Limit To All Plant Sequences

>Glyma18g50420.1   sequence type=predicted peptide   gene model=Glyma18g50420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNICARLKSKPPPQSSAKKRSSSRRERRLDDAAIREQAIAAAILFKQHQQQQQFDRSTSLRYPNGVSKKNNSHCLPRSSSSGARSLTDPLLLPLQLHLQGVNVDDLETNHIVLVHGGGFGAWCWYKSIALLEESGYKVAAIDLTGSGVSSFDTNIITSLSQYVKPLTDFLEKLPEGKKVILVGHDFGGACISYAMEMFPLKISKAVFVAAAMLTSGQSTLDIISQQAGSNDLMQQAQTFIYANGNDHPPTSFDMDKSLLRDLLFNQSPTKDIALASVSMRSVPFAPVLEKVSLSDLKYGSVRRFYIETLEDNAIPISLQENMVNANPPEKVFRLKGADHSPFFSKPQALHKLLVEISKIL*

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