Glyma18g50410 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g50410

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59550160
stop:	59554315
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26190	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr4:13262473-13266282 REVERSE LENGTH=1057	SoyBase	E_val: 1.00E-64	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03031	PFAM	NLI interacting factor-like phosphatase	JGI		ISS
UniRef100_I1N4M0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N4M0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LRQ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Emb\|CAB39684.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LRQ0_ARATH	SoyBase	E_val: 2.00E-69	ISS

Expression Patterns of Glyma18g50410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50410

Paralog	Evidence	Comments
Glyma08g27201	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g269100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g50410

Limit To All Plant Sequences

>Glyma18g50410.3   sequence type=transcript   gene model=Glyma18g50410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACATATTTATTTAATTACTTGATTTTTGTTTTTCCAATAATATGATTCGAAGTGGGCGTGTAAAAAAAAGATTTCTTAGGGTGAAGGTTGGATCTAGTTATGATTTAGGTATCTCAATTTGCCGCTCTTCCGCTGCGCCGCCCCCTTATCGTCACCACAAAACCTAAGACACTCAATAGATCTTAACTTGGTAACCACTTTCTCACGGCAAGGGCTGTTTGAACTTTGAACCGCCGCCGTCAACCGTCTGCCACTGCCAGAGTTCATTTGGACAAAAGACAATGGGGGAGTAGAGGATTCTATAAACCTTGGGAGCTGTCATCTATACAGGGATTATAGTGTTACTTGCATTATTAATTTACTTAGATAACAAGACACATAGGATGGAACCCAGTAGAGAGCAAAGAAAAAAATTAGTTCGTCACAGACCAAAGGAAGGTATTAAAAATACTATGAATACTGAGTCAACTGTATTAGATGAAGCAAATAGTGATAAACAACCCCGTAGAGAGAAAAGAAAAAGAAAAAGAAAAAAATTAGTTTGTCCCATACCAAAGGAAGGTATAAAAAATACTATGAATAATGAGTCAACTGCATTAGATGAAACAAATAGTGATAAACAACCCCGCAGAGAGAAAAGAAAAAAATTAGTTTGTCACATACCAAAGGAAGGTATAAAAGATACTATGAATACTGAGTCAACTGTATTAGATGAAACAAATAGTGATAAACAACCCCGTAGAGAGAAAAGAAAAAGAAAAAAATTAGTTCGTCGCATACCAAAGGAAGGTATAAAAAATACTATGAATACTGAGTCATCTGTATTAGATGAAACAAATAGTGATAAGCAAGTTTCTCGTAGTAATGAATTGAGGAAATTATATAGGCAAAAAACTTTGCAAATTTCTACAGTTAGACCATCAATTGTGTGTTTGAAGAAAAAGCTTATTATTCTTGATCTAAATGGGCTGCTTGTGGACATAGTTTCTCCCCCTCCAAAGTACCGTAAACCAGATGCAATGGTAGGAAAGAAAGCAATGTTCAAGAGGCCTTTTTATCTTGAGTTTCTGAACTTCTGCTTTGAGAAATTTGAAGTGGCTGTATGGTCTTCAAGAACCAAGAAAAATATTAACAATGTCATTAATCGTTTGATGGGAAACATGAAAGAAAGGTTGCTTTTTTGTTGGGATCTTTCTTATTGTACCAAAACAAGTTTCAAAACTCTTGAAAACAAGCAGAAGCCACTGGTTTTTAAGGATTTGAGGAAAATTTGGGAGAAACATGATTCTAATCTTCCATGGGAGAAGGGATACTTCAATCAATCAAATACATTGCTGTTGGATGATTCTCCATACAAGGCATTGCTTAATCCAGTAAACAAAATCCATACAACTCAGTGTTCCCGCGCACGTTCAGATTTCAGAATGAAAGTGACAATTCACTAGCTGTTGGAGGTGATCTGCGACAATATTTGGATGGATTAGCAAATGCTGAAAATATGGTGAAGTATGTTGAGCAGCACCCATTTGGTCAAGAAGCTATCAATGAAAGAAGTCAAAGTTGGAACTTCTACCTCAAGGTTATTGATAGTCTTTCTACCTGTTAACCTGAAGAGTGAAAACCGTGTTCGTCAACTTGGATATCAATGTTTACTTTGCTAGCTAAACAAGTCACAGTGGTTTTCCAAAGAAATGGAACTATAAAAGTCTTTTTATTTTTTGTTAAATTATTCAATTGGTCTCTAAATTATTTGGAAAATTTCAAACAAGTCCCTAAAGTTCTTTTTTTGGATCCATAGACTAAAATAGCAGGTCCCTAGGATTAGTTTATACCAGCTAAGAAAATGGCAATTTATGGAAGTTTATAAGTTTTAGGAATTCAACTAAAAAAAACTTAATTTAGGGACTTGAAAATTATCAAACACTTAACCAACTGAGTAATTTAACCCTTATTTTTCTCATCAATAGTGCAGCATTTTTTTTTTCTTTTCATTTTTGAACATCTTGTAAAACATCTGTAAGAAAAGCTGTAACAGCAAGCTGGCTATTGGAAGGAATACAGGAGGGTGAGACCTCAACAGTCAAAACTGAAGTAATGTTTATCATTTTTAATGTTGTTTCTGTTAGTATTTTTTCAATTGCTCTATTATAAGAATGTTAGCAACACACTCATTATATTATTGATTCCTTCTTTAAAAAGACCACCCTTGTTAAAGAGTGACCTGTTTA

>Glyma18g50410.4   sequence type=transcript   gene model=Glyma18g50410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACATATTTATTTAATTACTTGATTTTTGTTTTTCCAATAATATGATTCGAAGTGGGCGTGTAAAAAAAAGATTTCTTAGGGTGAAGGTTGGATCTAGTTATGATTTAGGTATCTCAATTTGCCGCTCTTCCGCTGCGCCGCCCCCTTATCGTCACCACAAAACCTAAGACACTCAATAGATCTTAACTTGGTAACCACTTTCTCACGGCAAGGGCTGTTTGAACTTTGAACCGCCGCCGTCAACCGTCTGCCACTGCCAGAGTTCATTTGGACAAAAGACAATGGGGGAGTAGAGGATTCTATAAACCTTGGGAGCTGTCATCTATACAGGGATTATAGTGTTACTTGCATTATTAATTTACTTAGATAACAAGACACATAGGATGGAACCCAGTAGAGAGCAAAGAAAAAAATTAGTTCGTCACAGACCAAAGGAAGGTATTAAAAATACTATGAATACTGAGTCAACTGTATTAGATGAAGCAAATAGTGATAAACAACCCCGTAGAGAGAAAAGAAAAAGAAAAAGAAAAAAATTAGTTTGTCCCATACCAAAGGAAGGTATAAAAAATACTATGAATAATGAGTCAACTGCATTAGATGAAACAAATAGTGATAAACAACCCCGCAGAGAGAAAAGAAAAAAATTAGTTTGTCACATACCAAAGGAAGGTATAAAAGATACTATGAATACTGAGTCAACTGTATTAGATGAAACAAATAGTGATAAACAACCCCGTAGAGAGAAAAGAAAAAGAAAAAAATTAGTTCGTCGCATACCAAAGGAAGGTATAAAAAATACTATGAATACTGAGTCATCTGTATTAGATGAAACAAATAGTGATAAGCAAGTTTCTCGTAGTAATGAATTGAGGAAATTATATAGGCAAAAAACTTTGCAAATTTCTACAGTTAGACCATCAATTGTGTGTTTGAAGAAAAAGCTTATTATTCTTGATCTAAATGGGCTGCTTGTGGACATAGTTTCTCCCCCTCCAAAGTACCGTAAACCAGATGCAATGGTAGGAAAGAAAGCAATGTTCAAGAGGCCTTTTTATCTTGAGTTTCTGAACTTCTGCTTTGAGAAATTTGAAGTGGCTGTATGGTCTTCAAGAACCAAGATCTTTCTTATTGTACCAAAACAAGTTTCAAAACTCTTGAAAACAAGCAGAAGCCACTGGTTTTTAAGGATTTGAGGAAAATTTGGGAGAAACATGATTCTAATCTTCCATGGGAGAAGGGATACTTCAATCAATCAAATACATTGCTGTTGGATGATTCTCCATACAAGGCATTGCTTAATCCACCATACAACTCAGTGTTCCCGCGCACGTTCAGATTTCAGAATGAAAGTGACAATTCACTAGCTGTTGGAGGTGATCTGCGACAATATTTGGATGGATTAGCAAATGCTGAAAATATGGTGAAGTATGTTGAGCAGCACCCATTTGGTCAAGAAGCTATCAATGAAAGAAGTCAAAGTTGGAACTTCTACCTCAAGGTTATTGATAGTCTTTCTACCTGTTAACCTGAAGAGTGAAAACCGTGTTCGTCAACTTGGATATCAATGTTTACTTTGCTAGCTAAACAAGTCACAGTGGTTTTCCAAAGAAATGGAACTATAAAAGTCTTTTTATTTTTTGTTAAATTATTCAATTGGTCTCTAAATTATTTGGAAAATTTCAAACAAGTCCCTAAAGTTCTTTTTTTGGATCCATAGACTAAAATAGCAGGTCCCTAGGATTAGTTTATACCAGCTAAGAAAATGGCAATTTATGGAAGTTTATAAGTTTTAGGAATTCAACTAAAAAAAACTTAATTTAGGGACTTGAAAATTATCAAACACTTAACCAACTGAGTAATTTAACCCTTATTTTTCTCATCAATAGTGCAGCATTTTTTTTTTCTTTTCATTTTTGAACATCTTGTAAAACATCTGTAAGAAAAGCTGTAACAGCAAGCTGGCTATTGGAAGGAATACAGGAGGGTGAGACCTCAACAGTCAAAACTGAAGTAATGTTTATCATTTTTAATGTTGTTTCTGTTAGTATTTTTTCAATTGCTCTATTATAAGAATGTTAGCAACACACTCATTATATTATTGATTCCTTCTTTAAAAAGACCACCCTTGTTAAAGAGTGACCTGTTTA

Coding sequences of Glyma18g50410

Limit To All Plant Sequences

>Glyma18g50410.2   sequence type=CDS   gene model=Glyma18g50410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCCAGTAGAGAGCAAAGAAAAAAATTAGTTCGTCACAGACCAAAGGAAGGTATTAAAAATACTATGAATACTGAGTCAACTGTATTAGATGAAGCAAATAGTGATAAACAACCCCGTAGAGAGAAAAGAAAAAGAAAAAGAAAAAAATTAGTTTGTCCCATACCAAAGGAAGGTATAAAAAATACTATGAATAATGAGTCAACTGCATTAGATGAAACAAATAGTGATAAACAACCCCGCAGAGAGAAAAGAAAAAAATTAGTTTGTCACATACCAAAGGAAGGTATAAAAGATACTATGAATACTGAGTCAACTGTATTAGATGAAACAAATAGTGATAAACAACCCCGTAGAGAGAAAAGAAAAAGAAAAAAATTAGTTCGTCGCATACCAAAGGAAGGTATAAAAAATACTATGAATACTGAGTCATCTGTATTAGATGAAACAAATAGTGATAAGCAAGTTTCTCGTAGTAATGAATTGAGGAAATTATATAGGCAAAAAACTTTGCAAATTTCTACAGTTAGACCATCAATTGTGTGTTTGAAGAAAAAGCTTATTATTCTTGATCTAAATGGGCTGCTTGTGGACATAGTTTCTCCCCCTCCAAAGTACCGTAAACCAGATGCAATGGTAGGAAAGAAAGCAATGTTCAAGAGGCCTTTTTATCTTGAGTTTCTGAACTTCTGCTTTGAGAAATTTGAAGTGGCTGTATGGTCTTCAAGAACCAAGAAAAATATTAACAATGTCATTAATCGTTTGATGGGAAACATGAAAGAAAGGTTGCTTTTTTGTTGGGATCTTTCTTATTGTACCAAAACAAGTTTCAAAACTCTTGAAAACAAGCAGAAGCCACTGGTTTTTAAGGATTTGAGGAAAATTTGGGAGAAACATGATTCTAATCTTCCATGGGAGAAGGGATACTTCAATCAATCAAATACATTGCTGTTGGATGATTCTCCATACAAGGCATTGCTTAATCCACCATACAACTCAGTGTTCCCGCGCACGTTCAGATTTCAGAATGAAAGTGACAATTCACTAGCTGTTGGAGGTGATCTGCGACAATATTTGGATGGATTAGCAAATGCTGAAAATATGGTGAAGTATGTTGAGCAGCACCCATTTGGTCAAGAAGCTATCAATGAAAGAAGTCAAAGTTGGAACTTCTACCTCAAGGTTATTGATAGTCTTTCTACCTGTTAA

>Glyma18g50410.3   sequence type=CDS   gene model=Glyma18g50410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCCAGTAGAGAGCAAAGAAAAAAATTAGTTCGTCACAGACCAAAGGAAGGTATTAAAAATACTATGAATACTGAGTCAACTGTATTAGATGAAGCAAATAGTGATAAACAACCCCGTAGAGAGAAAAGAAAAAGAAAAAGAAAAAAATTAGTTTGTCCCATACCAAAGGAAGGTATAAAAAATACTATGAATAATGAGTCAACTGCATTAGATGAAACAAATAGTGATAAACAACCCCGCAGAGAGAAAAGAAAAAAATTAGTTTGTCACATACCAAAGGAAGGTATAAAAGATACTATGAATACTGAGTCAACTGTATTAGATGAAACAAATAGTGATAAACAACCCCGTAGAGAGAAAAGAAAAAGAAAAAAATTAGTTCGTCGCATACCAAAGGAAGGTATAAAAAATACTATGAATACTGAGTCATCTGTATTAGATGAAACAAATAGTGATAAGCAAGTTTCTCGTAGTAATGAATTGAGGAAATTATATAGGCAAAAAACTTTGCAAATTTCTACAGTTAGACCATCAATTGTGTGTTTGAAGAAAAAGCTTATTATTCTTGATCTAAATGGGCTGCTTGTGGACATAGTTTCTCCCCCTCCAAAGTACCGTAAACCAGATGCAATGGTAGGAAAGAAAGCAATGTTCAAGAGGCCTTTTTATCTTGAGTTTCTGAACTTCTGCTTTGAGAAATTTGAAGTGGCTGTATGGTCTTCAAGAACCAAGAAAAATATTAACAATGTCATTAATCGTTTGATGGGAAACATGAAAGAAAGGTTGCTTTTTTGTTGGGATCTTTCTTATTGTACCAAAACAAGTTTCAAAACTCTTGAAAACAAGCAGAAGCCACTGGTTTTTAAGGATTTGAGGAAAATTTGGGAGAAACATGATTCTAATCTTCCATGGGAGAAGGGATACTTCAATCAATCAAATACATTGCTGTTGGATGATTCTCCATACAAGGCATTGCTTAATCCAGTAAACAAAATCCATACAACTCAGTGTTCCCGCGCACGTTCAGATTTCAGAATGAAAGTGACAATTCACTAG

>Glyma18g50410.4   sequence type=CDS   gene model=Glyma18g50410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCCAGTAGAGAGCAAAGAAAAAAATTAGTTCGTCACAGACCAAAGGAAGGTATTAAAAATACTATGAATACTGAGTCAACTGTATTAGATGAAGCAAATAGTGATAAACAACCCCGTAGAGAGAAAAGAAAAAGAAAAAGAAAAAAATTAGTTTGTCCCATACCAAAGGAAGGTATAAAAAATACTATGAATAATGAGTCAACTGCATTAGATGAAACAAATAGTGATAAACAACCCCGCAGAGAGAAAAGAAAAAAATTAGTTTGTCACATACCAAAGGAAGGTATAAAAGATACTATGAATACTGAGTCAACTGTATTAGATGAAACAAATAGTGATAAACAACCCCGTAGAGAGAAAAGAAAAAGAAAAAAATTAGTTCGTCGCATACCAAAGGAAGGTATAAAAAATACTATGAATACTGAGTCATCTGTATTAGATGAAACAAATAGTGATAAGCAAGTTTCTCGTAGTAATGAATTGAGGAAATTATATAGGCAAAAAACTTTGCAAATTTCTACAGTTAGACCATCAATTGTGTGTTTGAAGAAAAAGCTTATTATTCTTGATCTAAATGGGCTGCTTGTGGACATAGTTTCTCCCCCTCCAAAGTACCGTAAACCAGATGCAATGGTAGGAAAGAAAGCAATGTTCAAGAGGCCTTTTTATCTTGAGTTTCTGAACTTCTGCTTTGAGAAATTTGAAGTGGCTGTATGGTCTTCAAGAACCAAGATCTTTCTTATTGTACCAAAACAAGTTTCAAAACTCTTGAAAACAAGCAGAAGCCACTGGTTTTTAAGGATTTGA

Predicted protein sequences of Glyma18g50410

Limit To All Plant Sequences

>Glyma18g50410.2   sequence type=predicted peptide   gene model=Glyma18g50410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPSREQRKKLVRHRPKEGIKNTMNTESTVLDEANSDKQPRREKRKRKRKKLVCPIPKEGIKNTMNNESTALDETNSDKQPRREKRKKLVCHIPKEGIKDTMNTESTVLDETNSDKQPRREKRKRKKLVRRIPKEGIKNTMNTESSVLDETNSDKQVSRSNELRKLYRQKTLQISTVRPSIVCLKKKLIILDLNGLLVDIVSPPPKYRKPDAMVGKKAMFKRPFYLEFLNFCFEKFEVAVWSSRTKKNINNVINRLMGNMKERLLFCWDLSYCTKTSFKTLENKQKPLVFKDLRKIWEKHDSNLPWEKGYFNQSNTLLLDDSPYKALLNPPYNSVFPRTFRFQNESDNSLAVGGDLRQYLDGLANAENMVKYVEQHPFGQEAINERSQSWNFYLKVIDSLSTC*

>Glyma18g50410.3   sequence type=predicted peptide   gene model=Glyma18g50410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPSREQRKKLVRHRPKEGIKNTMNTESTVLDEANSDKQPRREKRKRKRKKLVCPIPKEGIKNTMNNESTALDETNSDKQPRREKRKKLVCHIPKEGIKDTMNTESTVLDETNSDKQPRREKRKRKKLVRRIPKEGIKNTMNTESSVLDETNSDKQVSRSNELRKLYRQKTLQISTVRPSIVCLKKKLIILDLNGLLVDIVSPPPKYRKPDAMVGKKAMFKRPFYLEFLNFCFEKFEVAVWSSRTKKNINNVINRLMGNMKERLLFCWDLSYCTKTSFKTLENKQKPLVFKDLRKIWEKHDSNLPWEKGYFNQSNTLLLDDSPYKALLNPVNKIHTTQCSRARSDFRMKVTIH*

>Glyma18g50410.4   sequence type=predicted peptide   gene model=Glyma18g50410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPSREQRKKLVRHRPKEGIKNTMNTESTVLDEANSDKQPRREKRKRKRKKLVCPIPKEGIKNTMNNESTALDETNSDKQPRREKRKKLVCHIPKEGIKDTMNTESTVLDETNSDKQPRREKRKRKKLVRRIPKEGIKNTMNTESSVLDETNSDKQVSRSNELRKLYRQKTLQISTVRPSIVCLKKKLIILDLNGLLVDIVSPPPKYRKPDAMVGKKAMFKRPFYLEFLNFCFEKFEVAVWSSRTKIFLIVPKQVSKLLKTSRSHWFLRI*

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