Glyma18g50380 - SoyBase

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Report for Sequence Feature Glyma18g50380

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59525828
stop:	59530099
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02160	AT	Annotation by Michelle Graham. TAIR10: Bromodomain transcription factor \| chr3:394615-395808 FORWARD LENGTH=397	SoyBase	E_val: 4.00E-66	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG2389	KOG	Predicted bromodomain transcription factor	JGI		ISS
PTHR23307	Panther	TBP-ASSOCIATED FACTOR TAF (TBN PROTEIN)	JGI		ISS
PF07524	PFAM	Bromodomain associated	JGI		ISS
PF10406	PFAM	Transcription factor TFIID complex subunit 8 C-term	JGI		ISS
UniRef100_B9SNR2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tbp-associated factor taf, putative n=1 Tax=Ricinus communis RepID=B9SNR2_RICCO	SoyBase	E_val: 7.00E-128	ISS
UniRef100_I1N4L8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4L8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g50380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50380

Paralog	Evidence	Comments
Glyma08g27180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g268800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g50380

Limit To All Plant Sequences

>Glyma18g50380.2   sequence type=transcript   gene model=Glyma18g50380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTGCACCGTTGCTTTCTCTCGTTGAAAACGACGCCGTTGCAAGGGAAACTTAACATTATTCTTTCTTCCCTTTCATGCCCCTCCCCCAATTAATCTTTGATTTATTAGAGGGTTCAAATCTCGAAACCGCATCGTGTCCGTAATCCTTCTTCCAAATTTCCAACCTCCCTCTGCCTCTTCTAATGGTATCTTATCTTTCGATCGAAGGGTTTGCAAGGGTTTAAGCTCAACCAAACCCTAAACCCTAAATTTCCCTATTTCTTTTCTCGATCTTCCACTCTATCTCTTTCCATCTCATAAATTTCGAATCCATATTCTCTCACCTCATGCACTCAGATCAAATCCGCACTCTTTTATCACTGAAGTGAGTGACTTTGTTGAGGTGTGGTTCTTGGTGTGGTATGATGAATGATAGTGATTTGGGGAATGTGTGCTGTTGGGTTTTCAAGTGATATGAAGTGCTGAATATGAGCAATGGCGGTGGGAAGACTGGAAGACAGCTTGAACAGCCTGGCACATGGAGGAGGAGGAAAGTTGGTGGTGGTGATGACTATGCCCGGGCTATAGCTAAGATTGCGGTAGCACAGGTGTGCGAAGGCGAGGGATTTCAGGCGTTTCAGCAGTCGGCTCTCGAGGCGTTGTCTGACGTTGTGGTTCGGTATATTTTGAACGTGGGGAAGTCTGCACATTGCCATGCTAATCTTTCAGGTAGAACTGAGTGCAATGCTTTTGATGTCATTCAAGGGTTGGAAGATATGGGATCAGTGCAGGGGTTTGCGGGCGCTGCAGATGTTGATCACTGCCTTGAAAGTTCAGGTGTTATTCGGGAAATTGTTCATTTTGTAAACGATGCTGAGCCGGTTATGTTTGCACACCCCATTCCTCGGTTTCCAGTTGTTAAAGAACGGGTGCCTAATCCAAGCTTTTTGCAAAAAGGAGAAGAGCCTCCTGGGGAGCATATTCCTGCTTGGTTGCCTGCATTCCCTGATCCACAAACTTATTCTCAGTCACCTGCAGTGAATGGAAGAGGGACAGAACCTCGTGCGGTCAAATTTGACCAAGAAAGAGAGAGTGGCAAGGGGGAGTGGCCTGCGTTGAATTTGCAGCAGCAGATGGTCTCAAATATGTTTGAAAAGTCTGCCTCGATTGACCCTGCAGATGCTAAGGCAAAAAGAGTAGCAGCAGAAGGTAACCCGTTCCTTGCTGCACCTTTGAAAATTGAGGACAAGGAAGTTGCTTCTGTTCCCCCTCCGGCTAAGCTTTTTAATGATGAAGCTCTTGATAATCCTGTTGTGGAAAATCTTGTTGAAAATGAACCGATTTCAGCATTGGAGACATTTGCTCCAGCAATTGAAGCAATGAAAAGCACAATCTGTGATTCCAAGGAAGATCAGACAAAATTTTGTGCCAATGAGAAGCCTACGGTGCGTTTTAAGATTGGGATTAAAAACAAATTATTAGGAAAATCCATTGGTTTGATCCCACAAAAAGAGGAGCATGAAAAGACTTTGCCATGGTTTGCAATGGAAGATGAGAAGGATGACAGAAAAAGAAGGGCTGAGAAAATTCTAAGGGAATCTTTGGAAAACCCAGATCAGCTTGTTCAGTTGTAAATTAGATTGCTTTAATTAGAATCTGTATACTTGATCAGGAGAATGTCAGGATAGCTAGTTCTGGGATATTCAAATTTAGGTAACTGTCTGTTTATGGGCATTATAGGATGGATATTACTATTTTGCTCTGACATTATCTCCCTTTAACAATCTTTCAGGATCTGATATGCTCGATTGGTCGTTCTGCATTGTGGAATTAAGGTTAGACATGAACTACCCCTCCCCCATTCTTTCTCACCTCTTCCCATTGTTCTGAAATCATTGTTAATCTTTTAACAGTATCTTTTTACTAATCTTCCTGCTTGCATTATAAGTATTGGATTTTTATTTGTATTTGCAACATATTATATATTTTTTCAATTATTACTTTTTTTTTATAAAGTAGTAAGCAGATTTGTTGAAGGATTTATATTCTTTTTTATGGTGGTGCTTCCTGGAATCAACGTTATCCTGTAGAATAAAAGATGTGTTGGCGTGGACAAGTGATTGAAGTAGTTCTGTACATTTTGCTGTCAAATTTATGGAATGACATCTTCTTATGGAATGCAAATTTATGGAATGACATCTTCTTATGGAATGCAAATTTAGGGCTGAAAAATGAGCCGAGTCTGTTCAATCCAACTCAAATTTTATACAATTTTGTTTTTCAGCTCAAAGTTTGACTTAATTTAA

Coding sequences of Glyma18g50380

Limit To All Plant Sequences

>Glyma18g50380.1   sequence type=CDS   gene model=Glyma18g50380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAATGGCGGTGGGAAGACTGGAAGACAGCTTGAACAGCCTGGCACATGGAGGAGGAGGAAAGTTGGTGGTGGTGATGACTATGCCCGGGCTATAGCTAAGATTGCGGTAGCACAGGTGTGCGAAGGCGAGGGATTTCAGGCGTTTCAGCAGTCGGCTCTCGAGGCGTTGTCTGACGTTGTGGTTCGGTATATTTTGAACGTGGGGAAGTCTGCACATTGCCATGCTAATCTTTCAGGTAGAACTGAGTGCAATGCTTTTGATGTCATTCAAGGGTTGGAAGATATGGGATCAGTGCAGGGGTTTGCGGGCGCTGCAGATGTTGATCACTGCCTTGAAAGTTCAGGTGTTATTCGGGAAATTGTTCATTTTGTAAACGATGCTGAGCCGGTTATGTTTGCACACCCCATTCCTCGGTTTCCAGTTGTTAAAGAACGGGTGCCTAATCCAAGCTTTTTGCAAAAAGGAGAAGAGCCTCCTGGGGAGCATATTCCTGCTTGGTTGCCTGCATTCCCTGATCCACAAACTTATTCTCAGTCACCTGCAGTGAATGGAAGAGGGACAGAACCTCGTGCGGTCAAATTTGACCAAGAAAGAGAGAGTGGCAAGGGGGAGTGGCCTGCGTTGAATTTGCAGCAGCAGATGGTCTCAAATATGTTTGAAAAGTCTGCCTCGATTGACCCTGCAGATGCTAAGGCAAAAAGAGTAGCAGCAGAAGGTAACCCGTTCCTTGCTGCACCTTTGAAAATTGAGGACAAGGAAGTTGCTTCTGTTCCCCCTCCGGCTAAGCTTTTTAATGATGAAGCTCTTGATAATCCTGTTGTGGAAAATCTTGTTGAAAATGAACCGATTTCAGCATTGGAGACATTTGCTCCAGCAATTGAAGCAATGAAAAGCACAATCTGTGATTCCAAGGAAGATCAGACAAAATTTTGTGCCAATGAGAAGCCTACGGTGCGTTTTAAGATTGGGATTAAAAACAAATTATTAGGAAAATCCATTGGTTTGATCCCACAAAAAGAGGAGCATGAAAAGACTTTGCCATGGTTTGCAATGGAAGATGAGAAGGATGACAGAAAAAGAAGGGCTGAGAAAATTCTAAGGGAATCTTTGGAAAACCCAGATCAGCTTGTTCAGTTGTAA

>Glyma18g50380.2   sequence type=CDS   gene model=Glyma18g50380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAATGGCGGTGGGAAGACTGGAAGACAGCTTGAACAGCCTGGCACATGGAGGAGGAGGAAAGTTGGTGGTGGTGATGACTATGCCCGGGCTATAGCTAAGATTGCGGTAGCACAGGTGTGCGAAGGCGAGGGATTTCAGGCGTTTCAGCAGTCGGCTCTCGAGGCGTTGTCTGACGTTGTGGTTCGGTATATTTTGAACGTGGGGAAGTCTGCACATTGCCATGCTAATCTTTCAGGTAGAACTGAGTGCAATGCTTTTGATGTCATTCAAGGGTTGGAAGATATGGGATCAGTGCAGGGGTTTGCGGGCGCTGCAGATGTTGATCACTGCCTTGAAAGTTCAGGTGTTATTCGGGAAATTGTTCATTTTGTAAACGATGCTGAGCCGGTTATGTTTGCACACCCCATTCCTCGGTTTCCAGTTGTTAAAGAACGGGTGCCTAATCCAAGCTTTTTGCAAAAAGGAGAAGAGCCTCCTGGGGAGCATATTCCTGCTTGGTTGCCTGCATTCCCTGATCCACAAACTTATTCTCAGTCACCTGCAGTGAATGGAAGAGGGACAGAACCTCGTGCGGTCAAATTTGACCAAGAAAGAGAGAGTGGCAAGGGGGAGTGGCCTGCGTTGAATTTGCAGCAGCAGATGGTCTCAAATATGTTTGAAAAGTCTGCCTCGATTGACCCTGCAGATGCTAAGGCAAAAAGAGTAGCAGCAGAAGGTAACCCGTTCCTTGCTGCACCTTTGAAAATTGAGGACAAGGAAGTTGCTTCTGTTCCCCCTCCGGCTAAGCTTTTTAATGATGAAGCTCTTGATAATCCTGTTGTGGAAAATCTTGTTGAAAATGAACCGATTTCAGCATTGGAGACATTTGCTCCAGCAATTGAAGCAATGAAAAGCACAATCTGTGATTCCAAGGAAGATCAGACAAAATTTTGTGCCAATGAGAAGCCTACGGTGCGTTTTAAGATTGGGATTAAAAACAAATTATTAGGAAAATCCATTGGTTTGATCCCACAAAAAGAGGAGCATGAAAAGACTTTGCCATGGTTTGCAATGGAAGATGAGAAGGATGACAGAAAAAGAAGGGCTGAGAAAATTCTAAGGGAATCTTTGGAAAACCCAGATCAGCTTGTTCAGTTGTAA

Predicted protein sequences of Glyma18g50380

Limit To All Plant Sequences

>Glyma18g50380.1   sequence type=predicted peptide   gene model=Glyma18g50380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNGGGKTGRQLEQPGTWRRRKVGGGDDYARAIAKIAVAQVCEGEGFQAFQQSALEALSDVVVRYILNVGKSAHCHANLSGRTECNAFDVIQGLEDMGSVQGFAGAADVDHCLESSGVIREIVHFVNDAEPVMFAHPIPRFPVVKERVPNPSFLQKGEEPPGEHIPAWLPAFPDPQTYSQSPAVNGRGTEPRAVKFDQERESGKGEWPALNLQQQMVSNMFEKSASIDPADAKAKRVAAEGNPFLAAPLKIEDKEVASVPPPAKLFNDEALDNPVVENLVENEPISALETFAPAIEAMKSTICDSKEDQTKFCANEKPTVRFKIGIKNKLLGKSIGLIPQKEEHEKTLPWFAMEDEKDDRKRRAEKILRESLENPDQLVQL*

>Glyma18g50380.2   sequence type=predicted peptide   gene model=Glyma18g50380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNGGGKTGRQLEQPGTWRRRKVGGGDDYARAIAKIAVAQVCEGEGFQAFQQSALEALSDVVVRYILNVGKSAHCHANLSGRTECNAFDVIQGLEDMGSVQGFAGAADVDHCLESSGVIREIVHFVNDAEPVMFAHPIPRFPVVKERVPNPSFLQKGEEPPGEHIPAWLPAFPDPQTYSQSPAVNGRGTEPRAVKFDQERESGKGEWPALNLQQQMVSNMFEKSASIDPADAKAKRVAAEGNPFLAAPLKIEDKEVASVPPPAKLFNDEALDNPVVENLVENEPISALETFAPAIEAMKSTICDSKEDQTKFCANEKPTVRFKIGIKNKLLGKSIGLIPQKEEHEKTLPWFAMEDEKDDRKRRAEKILRESLENPDQLVQL*

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