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Report for Sequence Feature Glyma18g50371

Feature Type:gene_model
Chromosome:Gm18
Start:59519559
stop:59522059
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g50371
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02150AT Annotation by Michelle Graham. TAIR10: plastid transcription factor 1 | chr3:391522-392589 FORWARD LENGTH=355 SoyBaseE_val: 1.00E-45ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009694GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0045962GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of development, heterochronic SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF03634PFAM TCP family transcription factor JGI ISS
UniRef100_B9SNR1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SNR1_RICCO SoyBaseE_val: 2.00E-77ISS
UniRef100_UPI0001B376A5UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001B376A5 related cluster n=1 Tax=unknown RepID=UPI0001B376A5 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g50371
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g50371 not represented in the dataset
Glyma18g50371 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50371
ParalogEvidenceComments
Glyma08g27155 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50371 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g268700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g50371
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g50371
>Glyma18g50371.1   sequence type=CDS   gene model=Glyma18g50371   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTACCGTGGAACAGAATTTTGACAATCACAAAGTGGAAGGACAAAACTCAGCACCTAGCAACCAACAATGAGAGACATAAGATCATGATTAAGAGCCCCAAAGAAGCAGATTTTCCATTAAAACAGGAGGGTCATTCTCAATCAATTACTGATCCTGAAAAGGCAAAGGCTTCAGCGAGCTCAGTAGCACAATGGCCAAGATTGAAAGATCCAAGGATTGTGCGAGTATCTAGAGCCTTTGGAGGAAAAGACAGGCACAGCAAGGTTTTCACAATAAGAGGGTTAAGAGACAGACGGGTGAGGCTATCAGTACCAACTGCCATCCAACTCTATGATCTTCAAGATAGGCTAGGGCTCAGTCAACCTAGCAAGGTTGTTGATTGGTTGCTCGATGCAGCTAAGCATGAAATTGATGAACTTCCACCACTTCCTGTTGTTCCTTCAGTGAATAACTTCACCCTTGGTCATCCATCTGCTGTTACCTCTAATGAAGCTACCACCTCAAATTCTCAGCCTAATGAGCAACTTCTTAATATCAACAGAAGCATTCAGTGGGAAGGTTCAAACCAGAATTCTACATGGAAATTAAAGCCTAAAGAAGTTTCACGAGAAATGATTAGCACTGATAAACCAAATTGGATAAGTAGAAGTGAAGAGGATAAGCAAGGAAGCAATAATGAAGGTCCTAGCACACGTGTTATACCAAATATTAATCTCTTACCAAGAGCAAATCTTAATCATCCTTCATTCTTGGGCTTGCTGAATACTATGCCACATGGTTACCAATGGGAACCTTCTGCTGGTGATGTTTCTCATCAGTTGGGAAACAATGGATTTGCAAACCAAACAGATATGCACAGCATTAACGTTGTACCTTTCCCAACATCAACATTGTCATTATCAACTGGGAATTCTCAAATTCTGCTATGTCCTCCAGGAACAGCACAACCATATTTCCCTTCACATGTTACAATGGACATGGATCCGAGACAAATCAACCACTATCAGATGTTGAGTTCAGGTTCTCAAAATCCATTGGCGAATTATCTCAATCATTCTTTCAGCTTGGCTATGATGACTCATAAACCTCTTCATTCACCCAACAGCAGCAAAAGCCCCTCCCACAAAGACCAAGATTTCCCTTCCAACTGA
Predicted protein sequences of Glyma18g50371
>Glyma18g50371.1   sequence type=predicted peptide   gene model=Glyma18g50371   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPWNRILTITKWKDKTQHLATNNERHKIMIKSPKEADFPLKQEGHSQSITDPEKAKASASSVAQWPRLKDPRIVRVSRAFGGKDRHSKVFTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAKHEIDELPPLPVVPSVNNFTLGHPSAVTSNEATTSNSQPNEQLLNINRSIQWEGSNQNSTWKLKPKEVSREMISTDKPNWISRSEEDKQGSNNEGPSTRVIPNINLLPRANLNHPSFLGLLNTMPHGYQWEPSAGDVSHQLGNNGFANQTDMHSINVVPFPTSTLSLSTGNSQILLCPPGTAQPYFPSHVTMDMDPRQINHYQMLSSGSQNPLANYLNHSFSLAMMTHKPLHSPNSSKSPSHKDQDFPSN*






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